Vicia villosa (hairy vetch): 131661345
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Entry
131661345 CDS
T09680
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
131661345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvo03021
]
131661345
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131661345
Transcription machinery [BR:
vvo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
131661345
RNA polymerase I system
131661345
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
131661345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW2_Spt5
KOW4_SPT5
KOW
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
ProQ_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
131661345
NCBI-ProteinID:
XP_058786841
LinkDB
All DBs
Position
LG3:49028237..49035786
Genome browser
AA seq
1033 aa
AA seq
DB search
MSHRGMDRDDEDDEDYEEQGVDFDEEEADEEEEDRGGGKKRRRSSYIDDDADEVDEDEEE
DDDGDDDYDGGGKASRKRQYKKVSASNFFDEEAEVDTDDEEEEEEGEDDFIVQPDNDLPE
EDDNRGRPRHRLPPHQEDHEDLEAVARSIQERYGKHRMAEYEEETTDVEQQALLPSVRDP
KLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACK
GLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQR
VTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFE
AIGGMMFKDGFLYKTVSIKSLSAQNINPTFDELEKFRKPGENGDVASLSTLFANRKKGHF
MKGDAVIVVKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELVKYFEPGNHVKV
VSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLV
LLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKCKIEKKINVQDRFKNTISSKD
VVKIVDGPCRGKQGPVEHIYRGILFIFDRHHLEHAGFICVKAHSCVVVGGSRSNGDRNGD
AYGRFSGLKNPPRIPQSPKRFSRGGHPSDSGGRHRGGGRGHDGLTGATVKVRMGSYKGYR
GRVIEVKGTSVRVELESQMKVVTVDRNHITDNVAVTPQRETSRYGMGSETPMHPSRTPLH
PYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPARDNWEDGNPGSWGASPQYQPGSPP
SRPYEAPTPGAGWANTPGGNYSEAGTPRDSSAYVNAPSPYLPSTPGGQPMTPNSASYLPG
TPGGQPMTPGTGGLDMMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYKV
ALGSSGNGETLTALPGEMEAVIPRKSDKIKIMAGALRGSTGKLIGVDGTDGIVKVDDTLD
VKILDLVILAKLA
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatagaggaatggaccgtgacgacgaagacgacgaggattacgaagagcagggc
gtcgatttcgatgaagaggaggcggatgaggaagaggaggatagaggcggtggaaagaag
cggaggagatctagttacatcgatgatgatgcggatgaggttgatgaagacgaggaggaa
gatgacgatggagatgatgattacgatggaggtggaaaagctagccgcaagcggcagtat
aagaaggtttctgcttcgaatttctttgacgaggaggctgaggttgatacggatgatgaa
gaggaggaagaagaaggagaagacgatttcattgttcagcctgacaatgatctgccagag
gaagacgataatagagggaggccccggcacagactgccaccccaccaagaagaccatgaa
gatcttgaagcagtggcaaggagcattcaagagagatatggtaagcatcggatggcagaa
tatgaagaagaaactaccgatgtagaacaacaagcacttttgccgtctgtgagagaccca
aagctgtggatggtcaaatgtgcgattggccgcgagcgtgaaacagctgtttgcctcatg
caaaagtacatagataagggatctgaattgcaaattagatcagctattgcgcttgatcat
ctcaaaaactatatatatgtggaagcagataaagaagctcatgttagagaggcttgcaaa
ggtcttcgaaatatatttggacaaaaaataacacttgtcccaataagagaaatgaccgat
gtgctatcagttgaaagcaaagctattgatcttgctagagatacatgggttagaatgaag
ataggcacttacaagggggaccttgccaaagttgtggatgttgataatgtgcgacagagg
gttactgtgaaactaattccgagaatagacttacaggctctagcaaacaagttggaaggt
agagaggttgtgaaaaagaaggcatttgttccccctcctcgttttatgaatgttgatgaa
gctagggaactgcatatccgtgtggagcataggcgtgatgcctatggggaacggtttgaa
gccattggtggcatgatgttcaaagatgggttcttatacaaaactgtatctattaaatcc
ctcagtgcccagaacatcaatcctacgtttgacgagcttgaaaagttccgtaaaccaggc
gagaatggagatgtagccagtttgtcaactctgtttgcaaacagaaagaaaggacatttc
atgaagggtgatgctgttattgttgtcaagggtgatttaaagaatttgaagggatgggtg
gaaaaagtggatgaggacaatgttcatataaggccagaaataaagggtcttcctaaaact
cttgcagtaaatgaaaaggaacttgttaaatattttgaacctggaaaccatgttaaagtt
gtttctggtgctcaagagggtgcgactggcatggttgtaaaggtggagcagcatgttctg
atcttaatatctgataccacaaaggagcatatccgtgtgtttgcagatgatgttgtagag
agttcggaagtaaccactggtgtgactagaattggggactatgaacttcgtgatcttgta
ttgctagataatttgagttttggtgtgataatccgtgtagagagtgaggcatttcaggtt
cttaagggggttcctgacagacctgaagttgtgcttgttaaattaagagagatcaagtgt
aagatagaaaagaaaataaatgtgcaggataggtttaaaaatacaatatcatcaaaagat
gttgtgaagatagttgatggtccctgcagaggcaaacaaggtcctgtggagcatatatac
agaggaatcttgttcatctttgatcgccatcatcttgaacatgcgggctttatatgtgtt
aaggcccactcatgtgtagttgtgggaggttcccgttccaacggagatagaaatggtgat
gcgtatggaagattctccggtcttaaaaatccacctcgcattccacagtccccaaagagg
ttttctcgaggaggtcatccgtctgactctggagggaggcataggggtggtggaaggggg
catgatggtttgactggtgcaactgttaaagtacgcatgggttcatataaaggttatcgc
gggcgtgttatagaagttaaaggaacatccgttcgggttgaattggagtcccagatgaag
gttgtaacggttgatcgcaatcatataactgacaatgtggctgttaccccacaacgtgaa
acatctcgatatgggatgggaagtgaaaccccaatgcatccatctcgaactcctttgcat
ccatatatgactccgatgagagatcccggagcaactccaattcacgatggaatgaggaca
cctatgcgtgatcgtgcttggaatccttatgcaccaatgagtcctgctagggataactgg
gaagatggaaatccaggctcttggggagccagtccacagtaccagccaggaagccctcct
tcccgaccatatgaagccccaactcctggtgctggttgggctaatactcccggtggcaat
tatagtgaggccggaaccccacgggacagttctgcctacgtgaatgctcctagcccgtat
ttaccatcaacaccaggtgggcagcctatgacaccaaattctgcgtcttatcttcctgga
acccctggaggacagcctatgactcccggaactggtggtctagacatgatgtctccagta
ttaggtggggacaatgaagggccttggcttatgccagacatcttggtcaatgtacacagg
gctggagaagaatctgttggagttataaaagaagttcttccggatggttcttataaggta
gctcttgggtctagcggaaatggtgaaacattaacggcccttcccggtgaaatggaggct
gtaattccaagaaaatccgataaaataaagataatggcaggggcattgcgtggttccact
ggcaagttgatcggtgtggatggcactgatggcattgttaaagtagatgatacattggat
gtgaagattttagacttggttattttggcaaaattagcttaa
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integrated database retrieval system
