KEGG   Vicia villosa (hairy vetch): 131661405
Entry
131661405         CDS       T09680                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
vvo  Vicia villosa (hairy vetch)
Pathway
vvo03030  DNA replication
vvo03410  Base excision repair
vvo03420  Nucleotide excision repair
vvo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vvo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131661405
   03410 Base excision repair
    131661405
   03420 Nucleotide excision repair
    131661405
   03430 Mismatch repair
    131661405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vvo03032]
    131661405
   03036 Chromosome and associated proteins [BR:vvo03036]
    131661405
   03400 DNA repair and recombination proteins [BR:vvo03400]
    131661405
DNA replication proteins [BR:vvo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    131661405
  DNA Replication Termination Factors
   ELG1-RFC complex
    131661405
Chromosome and associated proteins [BR:vvo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    131661405
DNA repair and recombination proteins [BR:vvo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     131661405
  Check point factors
   HRAD17(Rad24)-RFC complex
    131661405
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_22 Rad17 AAA_16 RuvB_N AAA_24 Mg_chelatase ADK AAA_5 AAA_11 AAA_14 SLFN-g3_helicase DEAD ResIII AAA_2 nSTAND3 AAA_assoc_2 AAA_28 AAA_19 AAA_30 PhoH AAA_25 AAA_7 ATPase_2 NPHP3_N RNA_helicase AAA_18 TIP49 Parvo_NS1 DUF815 NB-ARC IstB_IS21
Other DBs
NCBI-GeneID: 131661405
NCBI-ProteinID: XP_058786926
LinkDB
Position
LG3:52106048..52116376
AA seq 342 aa
MAPIIQSTQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQKKNGYPCPPYKIIV
LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMS
SRILYICKEEGIYLDAEGLSTLSTISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIV
PAEVVEALLKACKSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARIS
KKLGEADKCLVDGADEYLQLLGVVSITIQALCNMPEGFAYEG
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggcgccaatcatccaaagcactcaaccctgggtcgagaaatatcgcccaaagcaagtg
aaagacgttgctcaccaagaagaagtagtccgagtactcaccaacactctcgaaaccgga
agttgccctcacatgctcttctacggtcctcccggcaccggaaaaaccaccaccgcactc
gccatcgctcaccagcttttcgggcccgagctttataagtctagggttttggaactgaat
gctagtgatgatcgtggtattaatgttgttcggactaagattaaggattttgcggctgtg
gctgtcggtaccaatcagaaaaagaatggctatccttgtccgccgtataagataattgtt
ctcgatgaggcggattcgatgacagaagatgctcagaatgcactgaggcgtacgatggaa
acttactctaaggttacaaggttcttttttatatgcaactatattagcaggattatagaa
ccacttgcttctaggtgtgccaagttcaggttcaagccactgacagaagaaatcatgagc
agccgaatattgtacatctgcaaagaagaaggaatctaccttgacgctgagggtctctca
accctaagtactatttctcaaggagatcttcgtcgggctataacatacttgcagtctgct
gctcgcttatttggatcttccatctcatcgaaggacctgatttctgtgtctgggattgtt
ccagcagaggttgttgaggcacttcttaaagcatgcaaaagtggtaattttgatttagcc
aacaaggaagtcaacaatttcattgcagaggggtaccctgtctctcagatgctaactcag
ttgtttgaggctattgttgaagaaaatgacatatctgatgaacagaaggccagaatatcc
aagaagctgggtgaagcagataagtgcctagttgatggtgctgatgaatacctgcagctt
cttggtgttgtcagcattacaatacaggctttatgtaacatgccagaaggatttgcttat
gagggttaa

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