Vicia villosa (hairy vetch): 131661477
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Entry
131661477 CDS
T09680
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131661477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131661477
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131661477
Spliceosome [BR:
vvo03041
]
Complex C
Other components
Step II factors
131661477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11
KH_DEAH11_1st
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_22
AAA_19
ResIII
Helicase_RecD
PhoH
AAA_29
ABC_tran
AAA_11
Arc_MA
AAA_30
RsgA_GTPase
ATPase
Motif
Other DBs
NCBI-GeneID:
131661477
NCBI-ProteinID:
XP_058787014
LinkDB
All DBs
Position
LG3:54721982..54728201
Genome browser
AA seq
1730 aa
AA seq
DB search
MKKTIPSNQNPNFNRLPPCPDYRYRKPGFFTNHRVDRPPERNPPHREPNFILKLLHLGRG
ALHRDDVECLIGKCKPSPDNYCFYPCDGVAASLNFIQWTDAREAVVWFWESRLVGGHDFT
PELISNVMVPSDRVELEGRLRSLFVRHVNELMAGKEVKKWVEEWDGLSKEIGRVKGLLGK
PFPVRVQQQHVEKKKGLEEEKSLVERRLKEFEFAMECILQHLEESSDMESGEDFIPVFRF
DGSFDWKKIHSFIVRERRRLEEGLPIYAYRQEILQQIHHQQITVLIGETGSGKSTQIVQF
LADSGIGADESIVCTQPRKIAAKSLAQRVQEESRGCYEENSIQCVSTFSSSEKFDSRISF
MTDHCLLQQYMTDRNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCKRVDLRLIIMSATA
DAKQLSDYFYNCGVFHVHGRNFPVEMRYVASDYVDNSGSATVASYVFDVVKMATEIHKTE
KQGTILAFLTSQVEVEWACEKFKVLSAVALPLHGKLSSEEQFHVFQNYPGKRKVIFSTNL
AETSITIPGVKYVIDSGLVKDCRFDPCTGMNVLKVCLISQSSANQRAGRAGRTEPGRCYR
MYSEADYHSMKLNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIEMAVRNLI
QLGFIKLNNNVHELTYEGKYLARMGIEPRHGKLILGCFQLALGREGVVLAAMMPNASTIF
CRFGNEDDKQRSDCLKVQFCHSDGDLFTLLSVYKEWEALPRERRNKWCWENSINAKCMRR
CQDTVLEYESFLEREHGFVVPSYWRWDPHTPSVHHKNIKKVILASLSDNVAMFSGRNQLG
YEVAQTGQHVQLHPSSSLLVFAQKPSWVVFGDLLSVSNEYLVCVSAVDFESLYSLQPPPS
FDVSKMEDRKLQTKTLTGFGTTLLKRFCGKFNSNLLGVVSRIRKACLDERIFVEVNVDEN
IIQLYAASHDMNTATMLVSDVLEYEKKRLRTECMEKCLYHGSGSSSPMALFGSGAEIKHL
ELEKRSLSVDVYHSNINAIDDKELLMFFEKNTSGSICAVYKFPGMGKDHSDREKWGKITF
LSPDATKKALELDGEEFCGSNLKILPSQSAMGGDKTFSVPEVKAKIFWPRRLSRGFGIVI
CDKNDVSFMLRDFYNLAIGGRYVRCAPSNKSRDGIMITGLDRELPETEILDALRTATTRR
ILDFFVVRGEAVGNPPCSACEEALFKLISPLMPKVDPHISSFRVQVFPPEPKDSFMRALI
NFDGRLHLEAAKALEKIEGKVLPGCLSWQKIKCEQLFHSSLIFPAPVYHVIAEQLEKILA
SFNNLNGLEWNLNRTANGSHRLKITANATMTVAEVRRPLEELSRGKIIDHGSLTPAALQL
MLSRDGISLKCSIQQETKTYIVFDRHNLNLRIFGSPETIALAQQKLIQSLLSLHEEKQLV
IPLRGRDLPPDLMKQVVKNFGPDLHGLKEKVPGADLKLNTRQQAIFLHGNKELKPRVEEI
TLEIARSSLHSVERLDAGPSCPICLCEVEDGYQLEGCRHLFCRLCLVEQCESAIKNQGSF
PICCAHTGCGDPILLTDFRTLLSNDKLDDLFRASLGAFVTSSSGTYRFCPSPDCPSIYRV
ADPGERSEPFSCGACYVETCTKCHIEYHPFYSCEAYRELKDDPNLSLKEWCKGKEEVKSC
FACGQIIEKIDGCNHIECKCGKHVCWVCLEIFSESDECYDHLRTIHKAII
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagacaattccgtccaaccaaaaccccaatttcaaccgtctaccaccgtgtcct
gattaccgttaccggaaacctggatttttcaccaaccaccgtgttgaccgtcctccagag
cggaatccccctcaccgtgagcccaatttcattcttaagctcctccaccttggccgtggc
gctctccaccgcgacgatgttgagtgtttgatagggaaatgtaagccgagtccggataat
tattgtttttacccctgtgatggtgttgctgcgtcgctgaattttattcagtggacggat
gcgcgtgaagctgttgtttggttctgggaatcgaggctggttggagggcatgattttacg
ccggagttgatttcgaatgttatggtgccttctgatagggttgagcttgaaggtaggctg
aggagcctttttgtgaggcatgtgaatgagttgatggcggggaaggaagtgaagaagtgg
gtggaggagtgggatggtttgtcgaaggagattggtcgtgttaaggggttgttggggaag
ccttttcctgttagagtgcagcagcagcatgttgagaaaaagaaagggcttgaggaggag
aagagtttggttgagaggaggttgaaggagtttgagtttgcgatggagtgtattttgcag
cacttggaagagagtagcgacatggagagtggtgaagattttattcctgtgtttaggttt
gatgggagttttgattggaagaagattcacagcttcattgttcgggaacgtcgaaggctt
gaagaaggattgcccatttatgcttataggcaggaaattcttcagcaaatacatcatcaa
cagataactgtgttgatcggagagactggttctgggaagagtactcaaatagtgcagttt
ctagcagattctggcattggggctgatgagtcaattgtgtgcacccagcctcgcaagatt
gcagccaagtcattggctcaaagggtgcaggaggaaagtaggggatgttatgaagaaaat
tcaatacagtgtgtttctacattttcatccagcgagaagtttgattccaggatatcattc
atgacggatcattgtttattgcagcagtacatgactgatcgaaatttgtctggggtatcg
tgcattatagttgacgaggctcatgaaaggagcttaaatacggatctacttctggcactg
ataaaaaatttactttgtaagagggttgacttgcgccttatcattatgtctgccacggct
gatgcaaaacagctatcggattatttctacaactgtggagtttttcatgtacacgggaga
aacttcccggttgagatgagatatgttgcttctgattatgtagacaattctggctccgcc
actgtggcatcctatgtttttgatgttgtcaaaatggcaacagagattcacaagacagag
aagcaaggaactattcttgcttttctgacttcacaagtagaagtagaatgggcctgcgaa
aagtttaaagtcctatctgctgttgctctgcctttgcatggaaaactttcatccgaagag
caatttcatgttttccagaactatcctggaaaaagaaaagtgattttttcaacgaatctt
gcagagacatcgattacaattcctggtgttaagtatgtgatagattccgggttggttaaa
gattgccgatttgatccttgcactggaatgaatgtacttaaggtttgcttgatcagccag
agctcagctaatcaaagggctggtcgtgctgggaggactgagcctggcaggtgctatagg
atgtactcagaagctgattatcattctatgaaactaaatcaagaacctgagattcggaga
gttcatcttggtgtagcagttttgaagatccttgctttaggggtgaagaatgtgcaggat
ttcgattttgtggatgctccaagccctagttctattgagatggcggtcaggaatctaatt
caattaggattcattaaactgaacaataatgttcatgagctaacttatgaaggtaagtac
ttggcaagaatggggattgaacctaggcatggtaagcttattcttggctgtttccaactt
gctctgggcagagaaggtgttgtccttgctgccatgatgcccaatgcaagtactattttc
tgcagatttggtaatgaagatgataagcaaagatctgattgtctcaaagtgcaattttgc
cattctgacggtgacctttttactcttctctctgtgtacaaagaatgggaggctctgcct
cgagagaggaggaataaatggtgttgggaaaacagcatcaatgctaaatgtatgaggaga
tgccaagacacagttttggagtatgaatctttcctagagcgtgaacatggctttgttgtt
ccaagttactggcgttgggatcctcatacaccttctgttcatcataagaatataaaaaag
gttatactggcctcactttctgataatgtagctatgttttctggacgcaatcaacttggt
tatgaagtagcgcaaactggacaacatgttcaactgcatccatcttcttccttgctcgta
tttgctcagaagcctagttgggtggttttcggtgaccttctttcagtgtctaatgaatat
ctggtctgtgttagtgctgttgactttgaatcattatacagccttcaacctcctccctcg
tttgatgtatccaagatggaagatcggaagttgcaaactaaaacattgactggttttggc
actactcttctaaaaagattttgtgggaaattcaacagtaatttgcttggtgttgtttca
cgcattaggaaagcttgtttggatgaaagaatctttgttgaagtgaatgttgacgagaat
attatccagttatacgctgcttcacacgatatgaatacagctactatgttggtgagtgat
gttttagaatacgagaaaaagagattacgcaccgaatgtatggaaaaatgtttgtatcac
gggtctggttcctcatcacctatggctttgtttgggtctggtgctgagataaaacatctg
gaactcgagaaacgttccttgagtgttgatgtgtatcactcaaacataaatgcaattgat
gacaaggagctcctgatgttttttgagaagaatacctcaggttctatatgtgctgtgtac
aagttcccaggaatggggaaggatcattcagatagagaaaaatggggcaagataacattt
ttgtcccctgatgctaccaaaaaagctcttgagctggatggagaagagttttgtggctca
aacttgaaaatacttccttcacaatcagctatgggaggggataaaacattttcagttcct
gaagttaaagcaaaaattttttggcctcgtagactcagcagaggatttggcatagttata
tgtgataaaaatgatgtcagtttcatgttgagagatttttataaccttgcaattggaggg
aggtatgttcgttgtgcacctagtaataagtctagggacggtattatgataactgggctt
gacagagagcttccagaaactgaaattttggatgcactaagaactgctacaactagaagg
attctggactttttcgtggtgaggggagaggctgttggaaatccaccatgcagtgcctgc
gaagaggcactctttaaactaatttcccccttaatgcccaaagtagaccctcatattagt
tctttccgtgttcaggtgtttccacctgagccaaaggattctttcatgagagctttaatt
aattttgatggaagattacatttagaagcagctaaagctttggaaaaaattgaaggaaag
gtattgcctggatgtctgtcatggcaaaagataaagtgtgagcagttgtttcatagctcc
ttgatatttcctgcaccagtgtatcatgtgattgcggaacaactggaaaaaattcttgca
agtttcaacaatttaaatggtcttgagtggaacttaaacagaactgctaatggttcccac
cggctgaagataacagccaatgccaccatgacagtggcagaagttaggagacctctggaa
gaactgtcgagagggaaaatcattgaccatggcagccttacccccgcagctctacagctc
atgttgtccagagatggcattagtcttaaatgctccatacaacaagagacaaaaacatac
attgtttttgacaggcacaacttgaatttaagaatttttggctcgccagaaacaattgct
ttggctcagcagaagttaattcaatctctactctccctccatgaagaaaagcagttagta
atccctctcagagggagggacctacctcctgacttaatgaaacaagtggttaagaatttt
gggccagatcttcatggactaaaagagaaggtacctggggctgatctcaaacttaacaca
cgccaacaggcaatttttcttcatggtaacaaggagttgaaaccaagagtagaggaaata
actttggagattgcgcgctcaagccttcattcagttgagagactcgacgcaggacctagt
tgcccaatttgcttgtgtgaggttgaggatggatatcaacttgaaggctgtcgtcatttg
ttctgccggttgtgtctggttgagcagtgtgaatctgctataaaaaaccaaggcagtttc
ccaatatgttgtgctcacacgggctgtggagatcctattctgcttacggatttcagaact
ctcctgtcaaatgacaagttggatgaccttttcagggcttctttgggagcttttgtaaca
tcgagttcaggaacttataggttttgtccgtctcccgactgcccctcaatttatcgagtt
gcagatcctggcgaacgtagtgagccatttagttgtggggcatgttatgtggagacttgt
actaaatgccacatagagtatcatccattctactcatgcgaggcataccgagagttgaaa
gatgacccgaacttatctctgaaggagtggtgtaaagggaaggaagaagtcaaaagctgc
tttgcttgtgggcaaataattgaaaagatagatgggtgcaatcacattgaatgcaagtgc
ggaaaacatgtctgctgggtttgcttggaaatcttttcagaaagtgatgaatgttatgat
catttgagaactatacacaaggccatcatataa
DBGET
integrated database retrieval system
