KEGG   Vicia villosa (hairy vetch): 131662002
Entry
131662002         CDS       T09680                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like isoform X1
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
vvo  Vicia villosa (hairy vetch)
Pathway
vvo03022  Basal transcription factors
vvo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vvo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    131662002
  09124 Replication and repair
   03420 Nucleotide excision repair
    131662002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vvo03021]
    131662002
   03400 DNA repair and recombination proteins [BR:vvo03400]
    131662002
Transcription machinery [BR:vvo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     131662002
DNA repair and recombination proteins [BR:vvo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     131662002
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 131662002
NCBI-ProteinID: XP_058787653
LinkDB
Position
LG3:79373725..79380547
AA seq 303 aa
MAPAPSKNYTDDVSLLVVTLDTNPFFWSDFPSHFSDFLSQVLAFLNSILLLGQLNQVVVI
ATGCNSCSYIYDSSSNKNHASTNGTMPALYSNLLHNLDEFIAKDEQLTTAHEPGNVPSSL
LSGSLSKALCYIQRAFRSGPMHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSSVPVDSC
YIGSSNSAFLQQASYITGGIYYKPPQLDGLFQYLSAVFATDLHSRAFLRLPKSLGVDFRA
SCFCHKKTIDTGYVCSVCLSIFCEHHDKCSTSLFLARLNLLPLQQTIGKGRLNNVSGLVS
LIL
NT seq 912 nt   +upstreamnt  +downstreamnt
atggctcctgctccttcaaaaaattacacagatgacgtcagcctcctcgtcgtcacgctc
gacaccaaccctttcttctggtccgatttcccctcccacttctccgacttcctctctcaa
gttctcgcttttctcaattcaatactcctcctcggccaactcaaccaagtcgtagttatc
gccaccggttgcaattcatgttcatacatttacgattcatcttctaataagaatcatgcc
tccactaacggcacaatgcctgcactttattctaatcttcttcacaatctcgacgagttc
atcgcgaaagatgagcaattaacaacggctcatgaacctgggaatgttccgtcttcactc
ttatctggttcattgtccaaggctctatgctatatacagagagcttttcgttcaggacca
atgcatcctcaacctcggattctatgtctgcaaggatctcccgatgggcctgaacaatac
gtggcaatcatgaatgcaatattttctgctcagcgttcttcagttcctgtagattcttgt
tatattggttcaagcaattctgcattccttcagcaggcttcatacataaccggtggcata
tattataagcctccccaattggatgggctttttcaatatctttcagcagtgtttgcaact
gatttgcattctcgtgcatttttaaggcttcctaaatctctgggtgtggattttcgtgcc
tcgtgtttctgccataagaaaacaattgacactggctatgtatgttctgtatgcttatcc
atattctgtgagcatcacgacaagtgttcaacgtctctgtttttggccaggctcaatctg
ttgccgcttcaacagacaatcggaaaaggaaggctgaataatgtttctgggctcgtatca
cttattttgtga

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