Vicia villosa (hairy vetch): 131662226
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Entry
131662226 CDS
T09680
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131662226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131662226
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131662226
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131662226
mRNA degradation factors
3'-5' decay
Ski complex
131662226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
131662226
NCBI-ProteinID:
XP_058787930
LinkDB
All DBs
Position
LG3:100072693..100090029
Genome browser
AA seq
1335 aa
AA seq
DB search
MDPIKVSNELSFRVGFSGHSGHLRVEPLSTVERPKPQQSIPDFVLPPAFPRETPESITKF
IEETYLQPRLDPDEFAPEKVGRQWEFDWFDRAKVPLEPSVPRTVVVPIWEPPFRRPVKET
WKPKFEEVSVSDLSSGAVESGPLPRTSAKDFVRGSINNRPFRPGGLDDSQSLERTLPPGA
TNGEWVREILNGGPAQTIPPSLKQGLDLGALKRYPLSWNVYKDANTPKSSLDENSSGLSV
QFDDLFMKAWEADAVGEQEEDGHLSEVETVTLEAEVDMTEVSSKASQSGMSLDDILSADS
EGSKLHLEGFSGEVGHKKKLTWAKLEASEEIADRFHELIPDMALEFPFELDAFQKEAIYY
LEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL
LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVII
MLPRHINIILLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLFYSGELFKICE
REIFLPQGLKAAKDASRKKHLTAGVSSGPKPGASAGHDNARVQKRENTSRAKQHGTNFSG
TGGSYHNNGNGQSRWRAEASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADGMTGTDLT
SSSEKSEIRLFCDKAFSRLKGSDRNLPQVVRVQSLLRRGIGVHHAGLLPIVKEVVEMLFC
RGVIKVLFSTETFAMGVNAPARTVVFDTVRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKI
GTVILMCRDELPEESDLKHVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAE
FHAQKKLPEMQQLLKRKLNQPTQVIECIKGEATIEEYYDLYFEAEKYNSQISEAVLLSPN
AQSFLNIGRVVVIKSESAQDHLLAVIVKTPPTNSKLYIVFVIRPDLPFPVENASVGGKSQ
DKSNTFDQGYLLMPKSRRGILDEYTTSVSARKGKGVVNIKFPHRGSACGMSYEVREVDIK
EFLCICSSKIKIDQVGLLEDVSSSVYAKTVQLLQDLKSDGNKYPPALDPVKDLKLKEVRL
VETYRKWTRLLEKMSQNQCNGCIKLAEHLKLAKEIKAHKEEVIELQFQMSDEALQQMPDF
QGRIDVLKEIGCIDEDLVVQMKGRVACEMNSGEELICTECLFENQLDELEPEEVVALMSA
FVFQQKNASEPSLTSRLSEAKNRLYKTAIRLGELQASFKLPISPEEYAQENLKFGLVEVV
YEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFKNSAAIMGNSALCKKMEIASNAI
KRDIVFAASLYITGV
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatcaaagtatccaacgaactctctttccgcgtcggattttccggccacagc
ggccatctcagggtggagccgctgtccacggtggaacgtcccaagccgcagcagtccatt
cccgatttcgttctgccacctgcctttcctagagagacacctgaatctataacgaagttt
atagaagagacttatctccagccgagattggatccagatgaatttgcaccagaaaaagtt
gggaggcagtgggaatttgattggtttgacagggctaaagttccgcttgagccatcagtg
ccgcgaactgtggtagttccaatatgggaacctccgtttcgacgtccagtgaaagaaacc
tggaagccaaaatttgaggaggtgagtgtatctgatctatcatcaggagctgtagaatct
ggaccattgccacgcacttctgcgaaggattttgttaggggaagcatcaacaatcgccct
tttcgtccaggaggtttggatgattcgcaaagtctagaaagaactcttccacctggtgct
actaatggtgaatgggtccgtgaaattttaaatggtggccctgcgcagacaataccgcct
agcctaaagcaaggattggaccttggtgcactcaagcggtatccattgtcatggaatgtt
tacaaggatgccaatacgccaaagagttcattagatgaaaattcgagtggattgtctgta
cagtttgacgacttattcatgaaggcttgggaagcggatgctgttggagaacaagaagaa
gatggtcatttatctgaagtggagactgttacgctggaagctgaagttgatatgaccgaa
gtatccagcaaagctagccagagtggaatgtcacttgatgatatattatcagctgactca
gaaggatcaaaactgcatttggagggatttagtggcgaagtcggacacaagaaaaagcta
acttgggctaagctcgaagccagcgaagaaattgctgatcgctttcatgaacttattcct
gacatggcactagagtttcctttcgaattggatgcatttcagaaggaggctatttattat
cttgaaaagggggaatctgtttttgtggctgctcacacatccgccggaaagacagtagtt
gctgaatatgcatttgccctagcatcaaaacactgcactagagctgtgtatactgctcca
attaaaaccattagcaatcagaaatatagagatttttgtgggaagtttgatgtcgggctt
cttaccggtgatgtaagcttgaggccagaggcttcttgtctcatcatgaccacagaaatt
ttaagatcaatgctctatcgcggtgcagatataattcgagacattgaatgggttatattt
gacgaggtgcactatgtcaatgatgtagaacgaggagtagtttgggaagaagtaattatc
atgcttccaagacacatcaatatcatcctcctttctgccacggttccaaataccattgaa
tttgccgattggattggcaggacaaaacaaaaggaaatccgggttacggggacaacaaaa
agacccgtcccattggagcactgccttttttactctggagaattattcaaaatttgtgag
agggaaatatttctgcctcaaggtttgaaagctgctaaggatgcttcaagaaaaaaacat
ttgactgctggtgttagttctggtccaaagccaggggcttcagcaggtcatgacaatgct
cgtgttcaaaaacgagaaaatacatctcgagcgaaacagcatggaactaatttctctgga
actggcggcagctatcataataatggcaatggccaaagcagatggagagcagaagcttca
atgtggttgatgcttatcaacaaactctccaaaaagtccttacttcctgtggttatattt
tgtttttctaaaaatcgatgtgataaatctgctgatggcatgactggaactgacctcact
agtagctcagaaaaaagtgagatccgtcttttctgtgacaaagcgttttcaagactgaaa
ggatccgacagaaatttaccacaggttgttcgagtccaaagtcttcttcggagagggata
ggagttcatcatgctggccttcttccaattgtaaaggaagttgttgaaatgctgttttgc
cgtggtgttatcaaggtcttgttttcaacagagacatttgcaatgggagtcaatgcacct
gctagaacggtagtctttgacactgtaaggaagtttgacgggaaggaatttaggcagtta
ctaccaggagaatacactcaaatggcaggtcgtgctggcagaagaggacttgataagatt
ggtactgtcattttgatgtgtcgcgacgaactcccagaagagagtgatttaaaacatgtt
attgttggaagtgcaactcgtcttgaatctcaatttcggctaacctatattatgatcttg
catcttcttcgagttgaagaattgaaggtagaggacatgcttaaaagaagttttgctgaa
ttccatgctcagaaaaaacttccagaaatgcaacagcttttgaagcgaaagcttaatcag
cctacacaggttattgaatgtataaagggcgaggcaactattgaagagtactatgatttg
tatttcgaagccgagaaatacaacagccaaatatcagaggcagttttgctgtctcccaat
gctcaatcatttctcaatattggaagagttgttgtaataaaatcagaatcagcccaggac
cacttgcttgcagtgattgtgaaaactccccctacaaatagtaaactgtacattgttttt
gtgattagacctgacttgccattcccagtggaaaatgcttcagttggtgggaaatcacag
gacaaaagcaatacatttgaccaaggttatttgttaatgccaaaatcaagacgtggtatt
ttagatgaatatactacatctgtttctgctcgcaaaggaaaaggtgtcgtcaacatcaaa
ttccctcatcgtggttctgcttgtggaatgagctatgaagttcgtgaagtcgatattaaa
gaatttctatgcatatgtagcagcaaaattaagattgaccaagttggacttcttgaagat
gttagcagttctgtttacgcaaagactgttcagttgctccaggatttgaaatcagatgga
aataagtatcctcctgctctggatcctgtgaaagatctaaaattgaaagaggtgagactt
gtggaaacataccgtaagtggactagattattggagaagatgtcccagaatcagtgtaat
gggtgtataaaattggcggaacacctcaagttagcaaaagagataaaagcacataaagaa
gaagtcattgaactccagtttcaaatgtcggatgaagcacttcaacagatgccagacttt
cagggccggatagatgttctaaaggaaattggatgcattgatgaagaccttgttgttcaa
atgaaaggccgagttgcttgcgagatgaattctggagaggaattgatatgtacggagtgc
ttgtttgagaaccagctcgatgaactagaaccagaagaagtagtggcgttaatgtctgct
tttgtgttccagcagaaaaatgcatctgagccttccctcacaagcaggctatctgaagca
aaaaatagattgtataaaacagctataagactcggagaacttcaagcatcatttaagctc
ccaataagccccgaggagtatgcccaagaaaatctaaaatttggtctcgttgaagtggtt
tatgaatgggcaaagggtactccctttgctgacatatgtgagcttactgatgttcctgaa
ggtttgatagtaaggaccattgttaggttggatgagacatgtcgagagttcaaaaattct
gcggcaattatgggtaattctgccctctgcaaaaaaatggaaattgcttctaatgcaata
aagcgtgacattgtgtttgcagctagcttgtatattaccggcgtatga
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