Vicia villosa (hairy vetch): 131662260
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Entry
131662260 CDS
T09680
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131662260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131662260
Enzymes [BR:
vvo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131662260
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131662260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Mannitol_dh_C
Motif
Other DBs
NCBI-GeneID:
131662260
NCBI-ProteinID:
XP_058787976
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Position
LG3:105765045..105771117
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AA seq
720 aa
AA seq
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MKPRKLYSSALSRALTRALSSSTATTTPSQCGSAFPLKTVTVANFEPSLAELRHHVRSSD
FVAIDLEMTGVTSSPWRESFEFDRSDVRYLKIRDSASRFAVVQFGVCPFRWDSSNQSFVA
YPYNFFVFPRQELAGLGPCNEFLCQTTSINFLAKYQFDFNAFIHEGISYLSREQEREAIK
SLNSVHDSECSYISKLNDVRDLPSVNMADILFTERMKNKFSEWRDGLSQEQSQPDLIQGT
RKDSKQRFEVIFFKKHPALKLDGFTSRQLKLIQLVIKKHFKDLSYINVNNAGSSSQQIVV
YTDSEEELNLLLKEVKEESLRAKKMKIQAAVGFRHVIDLLSSEQKLIVGHNCFLDTAHVY
NKFIGPLPGTLEEFVASVNKCFPHIVDTKLLMNADNMLQARMKKSRKSLGSAFSVFCPQI
AAGSKSNELVSPSYVKIDVEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGVDFK
LHESLKLASNDKLQKYINHLYLSWMHGDIIDLSTGDKVANSSPSYSPKSRYPNILFENIV
IIWGFPSNVKSSDVRECISKVFGLTSVVSVYQLDATAVFVQFSKTELVSDFLLLKENLER
SNGPISVLHPLSKLLDGGNTCAANYDTYKEICSSPLSEDLFADQANAVSVTPKTKLIEFK
VALGSEEHENPIVQDNVTDVAMNFVEKIKPNSIDQLRNVQSTGHASSFEIEDSGVAEANL
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgcgaaaactgtattcttcggcactctcacgtgctctaacacgtgccctcagc
tcttcaaccgccacaaccacaccgtctcaatgcggatcggcgtttcccttgaagacggtt
accgtcgcaaactttgagccgtcgttagcggagctccggcaccatgtccgctcgtcagac
ttcgtcgccatcgacctcgagatgaccggcgtaactagttctccgtggcgtgagtccttc
gagtttgaccgctccgacgtcaggtatctcaagatcagagactccgcgagcaggttcgcc
gtcgttcagttcggcgtctgtccgttccgatgggattcgtctaaccagtcctttgtagct
tatccgtacaatttctttgtttttccacgtcaggagcttgctggtttaggcccatgtaat
gagtttctctgtcagactacatcgataaatttcttggctaaataccagtttgatttcaat
gcattcatacatgaaggaatatcttatttgtccagagaacaagaaagggaagcaataaag
agtttgaattcagtgcatgatagtgagtgctcatacatttctaaattaaatgatgttaga
gacctaccatctgtcaacatggcagacattttgttcactgagcgaatgaaaaataagttt
agtgagtggcgtgatggattatcacaggagcaaagtcaaccagacctaattcaaggaact
cgaaaagactcgaaacaacgatttgaagtgattttctttaagaagcatccagctctcaag
cttgatggattcacctcccgccagcttaagttaattcagttggtcatcaaaaaacacttc
aaagatctttcttatatcaatgtcaacaatgccggttctagttcccaacaaatagttgta
tatacagactcggaggaggaactaaacttacttctgaaggaggtaaaggaggaaagtctc
agggccaaaaagatgaagatccaagctgcagttggatttcgccatgttattgatctcctt
tcgtcagaacagaagttgatagttggtcataactgttttctagatactgctcatgtatac
aacaaatttatcgggcctcttcctgggactcttgaagagtttgttgcctcagttaacaag
tgctttccacatattgttgacaccaaattactcatgaacgctgataatatgctccaagca
agaatgaaaaagtccagaaaatcattgggttctgcattttctgtgttttgtccacaaatt
gctgcaggctccaaaagcaatgagctagtttcaccatcctatgtaaaaatagatgttgaa
gttgatgattcaagatcgtccagctggaaccctggaggcaagcatgaggcagggtatgat
gctttcatgactggatgcatctttgcccagttatgctctgatttaggagttgattttaaa
ctccatgaatctttaaaattagcttccaatgataaactacagaaatacattaatcatcta
tatctaagttggatgcatggggatattattgatctaagtactggtgataaggttgcaaat
tcttcaccaagctatagccccaaaagccggtacccaaatattttgtttgagaacattgtt
attatatggggatttccctctaacgtgaaatcaagcgatgtacgtgagtgtatatctaaa
gtttttggcctaacttctgttgtttctgtataccaattggatgcaacagcagtgttcgtt
cagtttagcaagacggaattagtttccgactttcttttattgaaggaaaacttagagaga
agtaatggtccaatctctgttttgcatccgctgtcaaaacttttggatggtggaaataca
tgtgctgctaattatgatacttataaagaaatctgtagttcacccttgtcagaagattta
tttgctgatcaggcaaatgcagttagcgtgacgccgaagactaaattgattgaatttaag
gtagcattggggagtgaagaacatgaaaatccaattgtacaagataatgtaactgatgtt
gccatgaatttcgttgaaaaaatcaagccaaactcaattgatcagttaagaaatgttcaa
tctactgggcatgcctcctcatttgagattgaagattccggtgttgccgaagctaattta
tga
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