Vicia villosa (hairy vetch): 131662523
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Entry
131662523 CDS
T09680
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131662523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvo03019
]
131662523
Messenger RNA biogenesis [BR:
vvo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131662523
mRNA cycle factors
Common to processing body (P body) and stress granule
131662523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
131662523
NCBI-ProteinID:
XP_058788316
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All DBs
Position
LG3:complement(154399344..154405726)
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AA seq
970 aa
AA seq
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MLVKMDNMSAPSSWERAKRLYDKNLELDNKRRRSAQVRVPSDPNAWQQMRENYEAIILED
HAFSEQHNIEFALWQLHYKRIEEFRAYFNAALSSTNSNPSPGGKGPLRPDRITKIRLQFK
TFLSEATGFYHDLIIKIRAKYGLPLGYFEDSDNQIVMEKDGKKYADMKIGLVSCHRCLIY
LGDLARYKGIYGEGDSINREFTAASSYYLQAASLLPSSGNPHHQLALVASYSGDEVVTIY
RYFRSLAVDSPFTTARENLIVAFEKNRQSFSQLPGDAKVLAVKESSGRPTGKVRGKVEAK
LATKTASARIEEASSMQETYKYFCTRFVRLNGILFTRTSLETFTEVLAIVNAGLRKLLSS
GQDEELNFGTDAAENELVIVRIVCIIVFTIYNINKESEGQTYAEIVQRAVLLQNAFAAAF
ELMGYIIERCTELRDPSSSYLLPGVLVFVEWLACYPDLAQGNDVDENQATVRSKFWNRCI
SLMNKLLSVEPMSILDEEETCFNNMSRYEEGETENRLALFEDFELRGFVPLLPAQTILDF
SRKHSLGNDVEKERKARVKRILAAGKALANVVRVDQKVIYLDSKVKKFTIGVEPQTSDDF
VLATSYSGMLNTENFLQENSGDKSMVEVVRSNQDRYVEEDEDDEVIVFKPVVSETRADVV
VSSWAPHEGLEPSLKAFEGDLKFHLSSTSHPLNNINHQTLPVSVSGMMPQNLQPVQTSRW
IEEEISLGNNFEGLRLFENGHVMKPGLQEAVDMSNRVALPIPVQQSVAADTNVVFQGLPK
SSESVIPSKVDAIASSGVITENLYGMTTPALQASLRKSPVSRPARHLGPPPGFSPFPSKQ
GSEYSVSDSISGNPIVDDYGWLDGYHLDSSTTSLSSNGPQAYAQSNSHQVSNNGFSGMVS
FPFPGKKFPSVPLQVEKQNGWHEYQSHEHLKSHADQQPQPQQQLTNGNQQFSPLPEQFQG
QSIWTGRYLV
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgttagtaaagatggataacatgtctgctccttcatcatgggagcgtgcaaagcgcctc
tatgataagaaccttgaattggataataagcgtcggagatctgctcaagtgcgggtccca
tccgatccaaatgcttggcaacaaatgcgtgagaattatgaagcaataattcttgaggat
catgctttctccgagcagcacaatattgaatttgctctttggcagttgcattataagcgg
attgaggagtttagggcatacttcaatgccgccctctcttctactaactcaaatccatcg
ccgggaggaaaaggccctttacggcctgatcggataactaaaataaggcttcagtttaag
actttcctttcagaggcaacaggattttatcacgatcttatcattaaaatcagggcaaag
tatgggcttccacttggttactttgaggattcggacaatcagattgtgatggagaaagat
ggaaagaaatatgctgatatgaagataggtttagtatcttgtcatcgttgtctgatatac
ttaggcgatcttgctcgttataaaggaatttatggagaaggtgactcaataaatcgtgag
ttcacagcagcctctagctactacttgcaagctgcatctcttttgccttcaagtgggaat
ccccatcatcagcttgcattagtagcttcatattctggagatgaagtggtgactatttat
cgatattttcgtagtctggctgtggatagtccttttacaactgcaagagaaaacttgata
gttgcatttgagaagaatcgtcaaagtttctctcagctacctggtgatgctaaagttctt
gcggtcaaggaatcttcaggaagaccaactggcaaagtaagaggaaaagttgaagcaaaa
cttgcaacaaagacagctagtgctagaatcgaagaagcatccagtatgcaagaaacttat
aaatacttttgcactcgctttgtacgcctaaatggaatcttgttcactcgtacaagtctc
gaaaccttcactgaagttcttgccattgttaatgctggcctgcgcaaacttctttcttca
gggcaagatgaggaactgaattttggcactgatgcggccgagaatgaacttgtcattgtc
agaattgtctgcatcatagtatttacaatttataacattaataaggaatctgaaggtcag
acttatgcagaaattgtacagcgtgctgttcttcttcagaatgcatttgctgcagctttt
gaattgatgggttacataatagagagatgtacagagctgcgtgatccatcttctagttat
cttctacccggtgttttggtttttgttgaatggctggcttgttatccagatctagctcaa
ggcaatgatgtggacgagaatcaggctacggtcagatcaaaattttggaatcgttgtata
tcccttatgaataaactgctttcagttgagcctatgtcgattcttgatgaggaggaaact
tgctttaataacatgagcaggtatgaagaaggggaaactgaaaaccgacttgctttgttt
gaggactttgagttaaggggatttgttccactgcttcctgcacaaactatcttggacttt
tctaggaagcattcccttggaaatgatgttgaaaaggaaagaaaagctcgggtgaaaagg
attttagctgcagggaaggctttagcaaatgttgttagggttgaccagaaagtgatatat
ttggattcaaaggtgaagaaatttacaattggtgttgaacctcaaacctcagatgatttt
gttcttgctacctcctattcaggcatgctcaatacagaaaactttctgcaagaaaattca
ggagacaaatcaatggtggaagttgttcgatcaaaccaagatcggtatgtagaggaagat
gaggatgatgaagttattgttttcaagcctgtagtatctgagactcgagctgatgtggtt
gtctcatcatgggctccccatgagggtttggagccttctctaaaagcatttgaaggggat
ttaaaatttcatttaagttctacttcccaccctctcaataatataaaccatcaaacttta
cctgtttctgttagtggtatgatgcctcaaaacctccaaccagtgcaaacatcaagatgg
attgaggaggaaatttctcttggcaacaattttgaaggtcttcgcttatttgagaatggg
catgtcatgaaacctggcctacaagaagctgtagacatgtcaaaccgtgtagcacttcct
attcctgttcaacaatctgtcgctgctgatactaatgttgtgtttcagggtctcccaaaa
tcttcagaatctgtgataccatccaaagttgatgctattgcatcttctggagtaattaca
gaaaatttatatgggatgacaacaccagccttgcaagctagtttgagaaaatccccagtc
agtcgacctgctaggcaccttggaccacctccgggctttagtccctttccttccaaacaa
ggtagtgaatactctgtttcagattcaataagtgggaatccaattgtggatgattatggt
tggttagatggatatcatttggattcatcaactactagtttaagctctaacggtcctcag
gcttatgctcaatcaaattctcatcaagtcagtaacaatggctttagtgggatggttagc
tttcccttccctggaaaaaaatttccatctgtgcctcttcaggtggagaaacaaaatggt
tggcatgagtatcaatcacatgagcatttaaaatcacatgctgatcagcagccacaacct
caacagcagctcacaaatggaaaccagcagttttctcctctgcctgagcaatttcaagga
caatcaatttggacaggtcgttacttggtgtga
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