Vicia villosa (hairy vetch): 131662608
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Entry
131662608 CDS
T09680
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
vvo
Vicia villosa (hairy vetch)
Pathway
vvo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vvo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131662608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vvo03041
]
131662608
Enzymes [BR:
vvo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131662608
Spliceosome [BR:
vvo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
131662608
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_30
AAA_19
SRP54
T2SSE
nSTAND3
nSTAND_NTPase5
Cas3-like_C_2
AAA_16
NB-ARC
Motif
Other DBs
NCBI-GeneID:
131662608
NCBI-ProteinID:
XP_058788408
LinkDB
All DBs
Position
LG3:176831135..176845755
Genome browser
AA seq
906 aa
AA seq
DB search
MLMVILRKEGERQVKRRTSLDEDSGSESEEERLKDQREKEELVQHMKERDAAGTRKLTEH
KLTRKEEEEAIRRSNAAEQDDIHSLRKFSRQEYLKKREEKKLEELRDEIEDEQYLFEGVK
ISEVEQRDLRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDT
HAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQTSDDYQYVFEDQIDFIKASVMDGDEF
DFDEMEDSIEKSKVKSASEALQAERKKLPIYAYRDELLEAVDKYQVLVIVGETGSGKTTQ
IPQYLHEAGYTKHGMIACTQPRRVAAMSVSARVAQELGVKLGHEVGYSIRFEDCTSDKTI
LKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLISS
ATLDAEKFSDYFDSAPIFKIPGRRYPVEIHFTKAPEADYLDAAIVTSLQIHVTQPPGDIL
IFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVL
ATNIAETSLTIDGIKYVIDPGFVKMKSYNPKTGMESLLVSPISKASAMQRAGRSGRTGPG
KCFRLYTAYNYQNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLHFDFMDPPPAEALLKA
LELLFALSALNKLGELTKVGRRMAEFPVDPMLSKMIVVSEKYKCSEDIISIAAMLSIGNS
IFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRA
RDIRDQLAGLLERVEIELTTNSNDLDAIKKSITSGFFPHSAKLQKNGTYRTVKHAQTVHI
HPSSGLAQVLPRWAVYHELVLTTKEYMRQITELKPEWLVEIAPHYYQLKDVEDTSSKKMP
RGEGRA
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgctcatggtgattttaaggaaagaaggggaaagacaagttaagagaagaacttccctt
gatgaagatagtggttcagagtcagaagaagaaagattgaaagatcaaagagagaaggag
gaattagtgcagcatatgaaagaaagagatgctgcaggaacacggaagttgactgaacac
aaattgacccgaaaggaggaagaagaagcaattcgaagatctaatgctgctgaacaggat
gatattcattctttaagaaagttttcaaggcaagaatacctgaagaaaagggaggaaaag
aaattagaagaactgagagatgaaatagaagatgagcaatatctttttgaaggtgtgaag
atttcagaagtggaacagcgtgacctaaggcacaagaaagagttatatgaacttataaag
aagcggtcggaggaggctgacaatgtgaatgagtatagaatgccggatgcttatgatcag
gaaggtggtgttaatcaagaaaagagattttctgtggccatgcagcgttacagggataca
catgctgaggaaaagatgaatccatttgctgaacaagaagcatgggaggaacatcagatt
ggaaaagcaacactgaagtatggttccaaaaataaaaaacaaacatctgatgattaccag
tacgtgttcgaggaccaaattgattttatcaaggcatcagtgatggatggagatgagttt
gattttgatgagatggaagattcaattgaaaagtccaaagtaaagtcagcatcggaggca
cttcaggcggagaggaaaaaattacccatttatgcttatcgggatgaattgctcgaagct
gttgataaatatcaggtgcttgtaattgtgggtgaaaccggttctggaaagactacacaa
attcctcaatatcttcatgaagctggttatacaaaacatggaatgattgcatgtactcag
ccacgtcgtgttgctgctatgagtgtgtctgctcgagttgctcaagaattaggtgttaaa
ctaggacatgaggttgggtactccatccgttttgaggattgcacatcggacaagactatt
ctcaaatatatgactgatggaatgttgctgagagaatttcttggtgagcctgatctggca
agttatagtgttgtgatggtggacgaggctcatgaaagaactctctcaactgatattttg
tttggattagtcaaggatatttctcgcttccggcctgatctcaagttgctgatatcaagt
gctacacttgatgcagaaaagttcagtgattacttcgactctgctcccatattcaaaatt
ccagggagaaggtatccggttgaaatacactttaccaaagccccggaagctgattactta
gatgctgccattgtcacgtcacttcaaatccatgttactcaacctcctggagatatactg
atatttcttactggtcaagaagaaattgaaacggctgaagaaatcttgaagcaccgaact
agaggtttagggactaaaattgccgaattaattatatgtcctatatatgccaacctacca
actgaactacaagcaaaaatatttgaaccaactcctgaaggggcacgaaaggttgtcctt
gccaccaatattgcagaaacatcattgacaattgatggaataaagtatgtcattgatcca
ggatttgtaaaaatgaaaagttataatccaaagacaggaatggagtctttacttgtgtct
cccatctctaaagcctcagcaatgcaacgagctggtcgatctggaagaacaggtcctggg
aagtgcttccggttatataccgcatacaactatcaaaatgatttagacgacaacacggta
cctgaaattcagcggacaaacctcgcaaatgtggtcctgactttaaaaagtcttggtatt
catgacttgttgcactttgattttatggaccccccacctgctgaagccttattgaaagcc
ctggaacttctatttgctctgagtgctttaaataagcttggcgagttaactaaggtaggg
agacggatggctgagttcccagttgatcctatgttgtcaaaaatgatagtcgtttcagaa
aaatacaagtgttcagaagacatcatttccattgctgctatgctttctattggaaactca
atattttaccgtccaaaggataaacaagttcatgcagacaatgcgaggctgaattttcac
actggaaatgttggagaccatattgcattgctaaaggtctacaattcttggaaagaaacc
aattattcaacccagtggtgttatgaaaattatattcaggtaaggagtatgaaacgggca
agagatatccgtgatcaactagcaggtttactagagagggttgagatcgagctcacaaca
aattctaatgatttagatgccatcaagaaatctataacatcaggatttttcccacactcg
gcaaaattgcaaaaaaatggaacatatcggacagttaaacatgcacagactgttcacata
catcctagttccggattggcacaggttcttccaagatgggctgtgtaccacgaactagtt
ctcacaaccaaggagtatatgagacagatcacggagttaaaaccagagtggttggtggag
atagccccccactattaccagcttaaggatgttgaagacacgagttcaaagaaaatgcct
cgaggagaaggacgcgcatag
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