KEGG   Vulpes vulpes (red fox): 112925309
Entry
112925309         CDS       T05911                                 
Symbol
SEH1L
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
vvp  Vulpes vulpes (red fox)
Pathway
vvp03013  Nucleocytoplasmic transport
vvp04150  mTOR signaling pathway
vvp05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:vvp00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    112925309 (SEH1L)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    112925309 (SEH1L)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    112925309 (SEH1L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvp03019]
    112925309 (SEH1L)
   04131 Membrane trafficking [BR:vvp04131]
    112925309 (SEH1L)
Messenger RNA biogenesis [BR:vvp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     112925309 (SEH1L)
Membrane trafficking [BR:vvp04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    112925309 (SEH1L)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR35_TULP_N EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 112925309
NCBI-ProteinID: XP_025861783
UniProt: A0A3Q7SXM1
LinkDB
Position
Unknown
AA seq 486 aa
MRSRRRVSGREGQGAGRARRRAGSWRGAVRAPAAAGSGWAAVRTPPASALFGGGRGRRKR
RALSEAMFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWK
THSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRT
SVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSS
SRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRS
FHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLA
SSGDDGCVRLWKANYMDNWKCTGILKGNGSPVNGNSQQGNSNPSLGPSIPNLQNSLNGSS
SSRYFFPPLDSPRAGSRWSSYAQLLPPPPPLVEHSCDADTANLQYPHPRRRSLSRPLNPL
PENEGV
NT seq 1461 nt   +upstreamnt  +downstreamnt
atgcgcagtcgccgtcgcgtctccgggcgtgaagggcagggggcggggcgagcgcggcgg
cgcgcgggcagctggcgcggtgcagtgcgcgccccggcagccgcggggtccgggtgggct
gcggtccggacgccgcccgcgtccgccctcttcggaggtgggcggggccggcggaagaga
cgggccctgtcggaagccatgtttgtggcgcgcagcattgcggcggaccataaagatctc
atccacgatgtctctttcgacttccatgggcgacggatggctacctgctccagcgaccag
agcgtcaaggtctgggataaaagtgaaagtggagattggcattgtactgctagctggaag
acacatagtggatctgtgtggcgtgtgacgtgggcccatcctgaatttggacaggttttg
gcttcttgttcttttgaccgaacagctgctgtgtgggaagaaatagtaggagaatcaaat
gataaactgcgaggacagagtcattgggttaaaaggacaactctagtggatagcagaaca
tctgttactgatgtgaaatttgctcctaagcatatgggtcttatgttagcaacctgttca
gcagatggtattgtaagaatatatgaagcgccagatgttatgaatctcagccagtggtct
ctgcaacatgagatttcatgtaagctaagctgtagttgtatttcttggaacccttcaagc
tctcgtgctcattcccccatgatagctgtaggaagtgatgacagtagtccaaatgcaatg
gccaaggttcagatttttgaatataatgaaaacaccaggaaatatgcaaaagctgaaacc
ctcatgaccgtcacagatcctgtacatgatattgcctttgctccaaacttgggaaggtct
ttccatattctagccatagcaaccaaagatgtgagaatttttacattaaagcctgtgagg
aaagaacttacttcctctggtggaccaacaaaatttgaaatccatatagtggctcagttt
gataatcataattcccaggtttggcgagtgagttggaatataacaggaacagtgctagca
tcttcaggagatgatggctgtgtaagattgtggaaagctaattatatggacaattggaag
tgtactggtattttgaaaggtaatgggagccctgtcaatgggaattctcagcagggaaac
tcaaatccttccctaggtccaagtatcccaaatcttcaaaattcattaaatggatcttct
tctagcaggtatttctttccccctctggattccccacgggctggatcgagatggtccagt
tatgcccagctccttcctcctcctcctcctctggtagagcactcttgcgatgctgacact
gccaacctccagtatcctcaccctcgcagacgatctctctctcggcctcttaatccctta
cctgagaatgaaggggtttaa

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