Vibrio vulnificus CMCP6: VV1_0135
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Entry
VV1_0135 CDS
T00108
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vvu
Vibrio vulnificus CMCP6
Brite
KEGG Orthology (KO) [BR:
vvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vvu03016
]
VV1_0135 (rnd)
Enzymes [BR:
vvu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
VV1_0135 (rnd)
Transfer RNA biogenesis [BR:
vvu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VV1_0135 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AAO08673
UniProt:
A0A3Q0L1F8
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All DBs
Position
I:complement(120019..121191)
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AA seq
390 aa
AA seq
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MPAEFQGWHFYFQSDSERRVNYQIITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQL
GLIQLFDGDTLSLIDPTVLTDMSAFTELLNDASVMKVLHACGEDLEVFHNALGAIPVPMV
DTQIMAAFLGHGLSTGFAALVEQYLNVELDKSESRTDWLARPLSDKQLEYAAADVHYLLP
LYEILLEKVMEAGWWQAAQQESELQASKRVKTPNADNAYLDIKGAWQLKPRELAILKPLA
TWRMQEAIRRDLALNFVFKEHDLLTVARLGLTSFKRMEEEGMDVRSVQRHGNRIAAMVKS
ARETDPEDYPAPIERLMDLPGYKQLFKKLKDEVTHASKATGLASEFLASKKQTNQLISWV
WKHQRDQNRLPDLMQGWRLDILGEKMNKLI
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgaattccaaggctggcatttttattttcaaagcgatagcgagagacgagtg
aattaccaaattattaccgaaaaccaagacctagttagggtatgcagtaaagcgcgcgaa
gcagacgttgtgatgttggataccgagtttgtccgcacccgaacgtattacccacaattg
ggcttaattcagctttttgatggtgacaccctctcgctgattgatccaacggtgctgact
gatatgagtgcgtttactgagttgcttaacgatgcctcggtaatgaaagtgcttcacgct
tgcggtgaggatttggaagtgttccacaatgcgttgggtgcgatacccgtgccgatggtg
gatacgcaaatcatggccgcgtttttgggtcacggtctatcgacgggctttgccgcattg
gtcgagcagtaccttaacgtggaactggataagagtgagtcgcgcacggactggttggct
cgtcctctgagtgacaaacagctggagtacgccgcggcagatgttcactacttgttgccg
ctgtacgagatcttgttggaaaaagtgatggaagcgggctggtggcaagcggctcagcaa
gagagcgaactgcaagcaagcaagcgtgtaaaaacgccgaatgccgacaatgcttatctc
gatatcaaaggggcttggcagcttaagccaagagagcttgcgatactcaagccgcttgcg
acttggcgtatgcaagaggcgattcgtcgtgacttagcgttgaactttgttttcaaagaa
catgacttactcacagtggctcgtttaggcctgacgagctttaagcgcatggaagaagag
gggatggatgttcgctctgtacagcgtcatggcaaccgcattgctgcgatggtgaagtcg
gcgcgtgagactgatcctgaggattatccagcaccaattgaacgtttgatggatttgcca
ggttacaaacaactgtttaaaaaactgaaagacgaagtcactcacgcttcgaaagcgaca
ggtttagcgagcgagtttttagcgtcgaagaagcagactaatcaactgatcagttgggta
tggaaacatcagcgcgatcaaaatcgcctgccagacttgatgcaaggttggcgcttagac
attctgggcgaaaaaatgaacaagctaatttag
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