Vibrio vulnificus CMCP6: VV1_0525
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Entry
VV1_0525 CDS
T00108
Name
(GenBank) Transcriptional regulator VpsR
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vvu
Vibrio vulnificus CMCP6
Pathway
vvu05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vvu00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VV1_0525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vvu03000
]
VV1_0525
Transcription factors [BR:
vvu03000
]
Prokaryotic type
Helix-turn-helix
Other families
VV1_0525
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
HTH_29
HTH_50
AAA_2
HTH_7
HTH_17
HTH_Tnp_1_2
HTH_22
AAA_13
DUF134
LacI
AAA
HTH_IclR
AAA_16
HTH_23
SMC_N
AAA_5
HTH_30
AAA_29
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
AAO09043
UniProt:
A0A3Q0L274
Structure
PDB
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Position
I:complement(524179..525513)
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AA seq
444 aa
AA seq
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MATQFKMDSVPGSLVVVGGTYEPWLSVLEQVGWKCHQCADLRKVDALLEDIGPCIGIVDL
SHDEFSLNGIANLVSTHKHVRWLAFIREQQLSSDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPTFGNNQDMGLIGESVPLKRLRDQIKRIGPTDVSILINGENGSGK
ETVARAIHKISSRAMKPFFSVKCRAMSEQRFQADVFGIGADANAGPSILEQADGGTVLFN
DILTISKTQQLHLLRFLQEGTIETSDGMKKVNVRILTANASDIEKALIDGDFSEELYHYI
NVLRINVPSLKERASDITLLARYYLQEYSKEYNAQAKGYSEEALRALMRYYWPGNVRELM
NQIKRAVLMSDSVIIDVPQLDLPKRGDSKRSLKNIREKSERDALLLVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISEQTV
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctactcagtttaagatggattctgtaccggggtcattggtagtggttggtggtact
tatgagccttggttgtccgttttggagcaggtgggctggaagtgccatcaatgtgcggat
ttacgcaaagtggacgcgctgttagaagatattgggccatgcatcggcattgttgacctt
agccatgatgagttcagtctcaatggcatcgctaatcttgtgagtacacacaagcacgtg
cgctggctcgcctttattcgtgaacagcaactcagctctgacacgatttgccagtttatc
gttaacttttgtatcgactttttcaccgcacctatccctgatgcgcaactgctcagtacg
ataggccatcaattgggcatgttaaagctcgagaagaaggtttggccgacgtttggcaat
aatcaagatatgggactgattggggaatcggttcctttgaagcgcctacgcgatcaaatt
aaacgcattggtcctaccgatgtgagcattctgatcaatggggaaaatggctcaggaaaa
gaaacggtcgctcgagccattcataaaatctcatcgcgtgcgatgaagccattcttttct
gtcaaatgtcgtgcaatgagcgagcaacgttttcaagcggatgtttttggcattggggct
gacgcaaatgcagggccgtcaatactagagcaggctgatggtggcacggtgctgtttaat
gacattctaaccatttccaaaactcagcaactgcaccttcttcgtttcttgcaagaagga
acgatagaaaccagcgatggtatgaagaaggtcaatgtccgcattttgacggcgaatgct
tccgatattgaaaaagcattgatcgatggggattttagtgaagagctttaccactacatc
aatgtgctgcggattaatgtgccaagtctcaaagagcgtgccagtgacatcaccttgttg
gctcgttactacctgcaagagtactcaaaagagtataacgcgcaggcaaaaggctattct
gaagaagcgctgagagctttgatgcgttattactggcctggcaatgtacgcgagctgatg
aatcaaattaagcgtgctgtcttgatgtcagatagcgtgatcatcgatgtgccgcaattg
gatcttcctaaacgtggcgatagtaaacgcagcttaaaaaatatccgtgagaaaagtgag
cgcgatgcgctattgctggtactggaatctcattctggtcaggtctctaatgccgccaaa
gaattgggggtttcacgtgcgacgatgtatcgactgctaaacaaacacaatttgatttcc
gaacaaacggtgtag
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