Vibrio vulnificus CMCP6: VV1_0534
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Entry
VV1_0534 CDS
T00108
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vvu
Vibrio vulnificus CMCP6
Brite
KEGG Orthology (KO) [BR:
vvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vvu03009
]
VV1_0534
Enzymes [BR:
vvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VV1_0534
Ribosome biogenesis [BR:
vvu03009
]
Prokaryotic type
rRNA helicases
VV1_0534
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_11
AAA_30
AtuA_ferredoxin
Utp25_C
AAA_22
YtzH
Motif
Other DBs
NCBI-ProteinID:
AAO09052
UniProt:
A0A3Q0L241
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All DBs
Position
I:535279..536505
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AA seq
408 aa
AA seq
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MIRTFADLDLDPNLLAAIEEMGYERPTQIQAEAIPQALEGRDILASAPTGTGKTAAFVLP
ALQYLQDFPRRKPGPARVLILTPTRELAMQVADQARALAKNTSLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWR
KQTMLFSATLEGKGVEGFTADLLNDPADIDAEPSRRERKKITQWYYRADNMEHKLALLKD
IINNQAERTIVFLKTRERLADLRAHLESEQVNCAWIQGEMPQDRRNNAIARFRDGSVNVL
LATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR
VARYVKEDIKERFVKELRPQHKKPVFKKKKKKDDKKTSVKKKSTKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtgatcagaacctttgccgatcttgatcttgacccaaacttgctggctgccatcgaagag
atgggctacgagcgtccaactcaaattcaggcagaagcaattccacaagccctagaaggc
cgtgatattcttgcttccgctccgacaggaaccggaaaaaccgccgcatttgtcttgcct
gcgctgcaatacttgcaagattttccacgccgtaaaccaggaccagcacgcgttcttatc
ctcacgccaacccgtgagctagcgatgcaagtggccgatcaagctcgtgcgcttgccaaa
aataccagtttgaacattttcaccatcacaggtggtgttcaataccaagaacatgcggat
atccttgcgaccacgcaagatatcgtggtagcgacaccgggccgcttgatggaatacatc
caagcagagcgctttgattgccgcgcgatcgaatggctgatcctcgatgaagcagaccgc
atgcttgacatgggctttgctccgacagtggatcgcctatctaacgaatgtcgttggcgc
aaacagaccatgctcttctctgcaacgctagaaggcaaaggggtggaaggttttaccgcg
gatctgctgaacgatcctgcggacattgatgctgagccttcgcgccgcgagcgtaaaaaa
atcacccagtggtattaccgtgcagataacatggagcacaagctcgcgctactgaaagac
atcatcaacaaccaagcggaacgtacgattgttttcctcaaaacacgtgaacgtctggcg
gatctacgtgctcacctcgaaagcgaacaagtcaattgcgcttggattcaaggtgaaatg
ccgcaagatcgtcgtaacaacgcgattgctcgcttccgtgatggcagtgtgaatgtacta
cttgcaaccgatgtcgcagctcgtggtatcgacttgcctgacgtgtcacacgttgtaaac
ttcgacatgccacgcagtgccgatgtttaccttcaccgcatcggtcgtaccgctcgcgca
ggtaagaaaggcaacgcaatctctattgtagaagcccacgaccaaccaatgatggatcgc
gttgctcgctatgtgaaagaggatattaaagagcgctttgtcaaagagcttcgccctcaa
cacaagaagccggtgtttaagaagaaaaagaaaaaagacgataaaaaaacgtcagtgaaa
aagaaaagcaccaaaaagaaaaagtaa
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