Vibrio vulnificus CMCP6: VV1_1212
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Entry
VV1_1212 CDS
T00108
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vvu
Vibrio vulnificus CMCP6
Pathway
vvu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vvu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VV1_1212 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvu03021
]
VV1_1212 (rpoC)
03400 DNA repair and recombination proteins [BR:
vvu03400
]
VV1_1212 (rpoC)
Enzymes [BR:
vvu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VV1_1212 (rpoC)
Transcription machinery [BR:
vvu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
VV1_1212 (rpoC)
DNA repair and recombination proteins [BR:
vvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
VV1_1212 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AAO09672
UniProt:
Q8DD19
LinkDB
All DBs
Position
I:1191668..1195870
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLGSMDLHAEVEQMREELDTTNSETKRKKLTKRLKLVEAFISSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREMINAKGEGMYLAGPAEAEKAYRTK
TAALHARVKVRITETVVDEDGHSTTETKMVDTTIGRAMLWQIVPKGLPFSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVINRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVEMMPHIEGGDVKVALTELAL
GRVVAEDIVKPGTEEILIPRNTLLDEKWCQIINDNSVDKITVRSVVTCDSDFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSVQVKNNGSVKL
NNAKFVINKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSSLSKADGDAVTAGETVANW
EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDAAGNDVMIPGTDMPAQYFLPGKAIVNIEDGAEVGIGDTLARIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEYSGTVSFGKETKGKRRLIITREGGETYEEMIPKHRQLNVFEG
ERVERGDVIADGPEAPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSEFLPGETVEYSQVKIANRNLEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQEGPS
AAQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctgaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctgtcttcaccagacatgattcgttcatggtcttttggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaaacctgaacgcgatggtctattctgtgcgcgt
atctttggcccagtaaaagactacgagtgtctttgtggtaaatacaagcgcctgaagcac
cgtggtgtgatctgtgagaaatgtggtgtagaagttactcagactaaagttcgtcgtgac
cgtatgggccacatcgaactggcttctccagttgctcacatctggttcctaaaatcgcta
ccgtctcgtatcggtctactcatggatatccctctacgtgatatcgagcgtgttctttac
ttcgaaatgtacgtagtcactgaaccaggtatgacggatctagaaaaatctcagatgctc
actgaagaagagtacctggatcgtctagaagagtggggcgatgagtttactgcgaaaatg
ggtgcggaagcgatcaaggacctactaggttcaatggatctgcatgctgaagttgagcag
atgcgcgaagagctagataccactaactctgaaactaagcgtaagaaactgactaagcgt
ttgaagctggttgaagcgtttatctcttcaggcaacaaccctgagtggatgatcctaact
gtacttccagttcttccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttcagatctgaacgacctataccgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtcttctagagctagcagctccggacatcatcgtacgtaacgaaaaacgtatgctgcaa
gagtctgttgatgcgctactggataacggtcgtcgtggtcgtgcgatcacaggttcaaac
aagcgtcctttgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctgttcaaaccattc
atctacagcaagcttgaaactcgtggcctagcgacgacaatcaaagcggcgaagaagatg
gtagagcgtgaagaagcggtcgtttgggatatcctagacgaagtaatccgtgaacaccca
gtactattgaaccgtgcaccgacacttcaccgtctaggtatccaggcgttcgaaccagta
ctgatcgaaggtaaagcgatccagctacacccacttgtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtacctctaacactagaggcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgaaatgatcaacgcg
aaaggcgaaggcatgtacctagcaggtcctgctgaagctgaaaaagcataccgcactaaa
actgcggcgctacacgctcgcgtaaaagttcgtatcactgagacagtggtagatgaagat
ggtcatagcacaacagaaaccaagatggtggataccactatcggtcgtgcaatgttgtgg
caaatcgtaccgaaaggcctaccgttcagcatcgttaaccaaaagctaggtaagaagcag
atttctaacctacttaacgaggcataccgtaagctaggtctgaaagacacagtaatcttc
gctgaccaaatcatgtacaccggttttgcttacgctgcactttctggcgtgtctgttggt
atcgacgacatggttgtaccaccagcgaagtacacggaaatcgcagaagcggaagaagaa
gtacgtgaaatccaggaacaataccagtctggtcttgtaactgcgggcgaacgttacaac
aaagtgatcgatatttgggcatcaaccaacgatcgcgtagcgaaagcgatgatggagaac
ctttcttctgaaacggttatcaaccgtgacggtgaagaagagcaacaagagtctttcaac
agcatctacatgatggcggactcaggtgctcgtggttctgcagctcagattcgtcagcta
gcgggtatgcgtggtctgatggcgcgtccagatggttcaatcatcgaaacgccgatcact
gcaaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacggcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgtagcacaagacgtggttgtaacagaacacgactgtggcacgctagaaggcgtt
gaaatgatgcctcatatcgagggtggtgacgttaaagtagcactgactgagcttgcgcta
ggtcgtgtggttgctgaagacattgttaagcctggtactgaagaaattcttatcccgcgt
aacacgctattggatgagaaatggtgtcagatcatcaatgacaactcagttgacaagatc
actgtacgttctgttgtaacgtgtgactctgactttggttgttgtgcgcagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggtgtaattgctgct
cagtctatcggtgaaccaggtacacagctaacaatgcgtacgttccacatcggtggtgcg
gcatcgacagcagcagcagaaaacagcgttcaagttaagaacaacggttctgttaagctg
aacaacgcgaaattcgttatcaataaagatggcaagctagtaatcacttctcgtgcttct
gagctgactatcattgatgaattcggtcgtaccaaagagaaacacaaactgccttacggt
tcttcactgagcaaggcagatggcgacgcagtaactgctggtgaaacagtagcaaactgg
gaagcgcacaccatgccaatcatcactgaagtggcaggtcgtgttcaattcgttgacatg
attgatggtgtaactgtttctcgtcaaacagacgatctaacaggtctatcttcaagcgaa
gtgacggatgccgcggctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgcggcaggtaacgatgtaatgatccctggtactgatatgccagctcaatacttc
ctacctggtaaagcgatcgtgaacatcgaagatggcgctgaagtaggcattggtgacact
ctagctcgtattcctcagaaatcgggcggtaacaaagacatcaccggtggtctaccacgc
gtagctgacctatttgaagctcgtaagccgaaagagccagctatccttgcagaatactct
ggtactgtaagcttcggtaaagagaccaaaggtaagcgtcgtctgattatcactcgtgag
ggtggtgagacatacgaagagatgattcctaagcatcgtcagttgaacgtgttcgaaggt
gagcgtgttgaacgtggtgacgtaattgctgatggtccagaagctccacacgatatcctg
cgtctacgtggtatccacgcagtgacccagtacatcgcgaacgaggttcaggaagtttac
cgtctgcaaggcgttaagattaacgataagcacattgagactatcgttcgtcagatgcta
cgtaagtgtactattactcatgctggtgactctgagttcttaccaggtgagacagtagaa
tactcacaagtgaagattgctaaccgtaatctagaagcagaaggcaaagagccagctcgc
ttcgaacgtgagctactaggtatcactaaagcgtctcttgcaactgaatcgttcatctct
gcagcatcgttccaggaaacgactcgcgtactaacagaagcagcagtttctggtaaacgt
gatgatctacgtggcctgaaagagaacgtgattgtaggtcgtctgatccctgctggtaca
ggttttgcgtaccaccaagatcgtcaggcgaaacgtgctcaagagcaagaaggcccatct
gctgcgcaagcaacggataacctagcggcgctactgaacgcaggtttctcttcagacgag
taa
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integrated database retrieval system
