Vibrio vulnificus CMCP6: VV2_0146
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Entry
VV2_0146 CDS
T00108
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vvu
Vibrio vulnificus CMCP6
Brite
KEGG Orthology (KO) [BR:
vvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vvu03016
]
VV2_0146 (rnb)
Enzymes [BR:
vvu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VV2_0146 (rnb)
Transfer RNA biogenesis [BR:
vvu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VV2_0146 (rnb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF2274
DUF7716
Motif
Other DBs
NCBI-ProteinID:
AAO07119
UniProt:
Q8D7K6
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All DBs
Position
II:complement(159574..161568)
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AA seq
664 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDSKTSFFIPPAYMKKCMHGDKV
IAIIRTENEREVAEPQELVEQMLNRFIGRVKMFKGKLNVVPDHPQLKKMSLKAKTKKGLN
PQEFAEGDWVVGHLIRHPLKDDNGFFVEISEKITDADDKIAPWWVTLAENDLPNSEPAGI
DDWQIKDDADLERIDMTHIPFVTIDGESTKDMDDALYAKKNDAGDFELTIAIADPTAYIT
PDDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIEGEIRPALCCTVTVSKDGVIGD
DIQFFAANIKSHARLAYDNVSDWLETGSCEKWQPSEEIAAIVRDLYEFSQARAEWREKNA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANRLVEESMITANICAGKTLQGHFGTGVFNC
HAGFKPEKIADVVELVNPEGTLEFTAESIATREGFAALRRWLSKQETTYLDNRIRKFQTY
SEVSNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKALILNKEPVQKPDDSVGEELAL
HRKHHKIAERNVADWLYARTLADAPENQTLFTGEIFDINRAGMRIRLLENGAAAFIPGSL
IIDNKERIECNGDLGTVSIDKEVVYKLGDVLEVVLADVNQENRSLVAKPTQVFAELPVVE
ETQN
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccacttttagcccagcttaagcaacaaattcaggaaaatctgcca
aagaaagaaggcacgattaaagcaaccgaaaaaggttttggctttctcgaagtcgatagc
aagacaagtttctttattccaccagcctacatgaagaaatgtatgcacggtgataaggtg
atcgccattatccgcaccgaaaacgaacgcgaagttgccgagccacaagagcttgttgag
cagatgctaaatcgcttcatcggtcgtgtgaaaatgttcaaaggaaaattgaatgttgtt
cctgatcatccgcaactgaagaagatgtctctcaaagccaaaacgaagaaaggtcttaac
cctcaagaatttgctgaaggcgactgggttgtcggccatttgatccgtcacccactaaaa
gatgacaacggtttcttcgtggaaatcagcgaaaaaattaccgatgccgatgacaagatc
gcaccttggtgggtaacgctggcggaaaacgatctacctaactctgagcctgccggtatc
gacgattggcaaattaaagatgatgcggatcttgaacgtatcgacatgacgcatatccct
tttgtgaccatcgatggtgagtccacaaaagacatggacgatgcgctttacgcgaagaaa
aacgacgctggcgattttgaattgacgattgccattgccgatccaaccgcttacatcaca
ccagatgatgaaatggacaaggttgcacgtgagcgtggctttaccatttatcttccagga
cgcaatatcccaatgctgcctcgtgaccttgctgatgaactgtgttcgctaatcgaaggt
gaaatccgccctgccctttgctgcacagtcaccgtcagtaaagacggcgtgattggcgat
gatatccagttctttgcggcaaacatcaagtcgcacgcccgtttggcgtatgacaatgtc
tccgactggctcgaaacaggcagctgtgaaaaatggcagccaagcgaagaaattgcggct
atcgtgcgtgacctgtatgaattctcacaagctcgcgcagaatggcgagagaagaatgcg
gtagtcttcccagatcgtcctgattaccgttttgagttgagtgaagataacgatgtcgtt
gcgattcacgctgacatgcgccgcagcgcaaaccgcttggttgaagagtcgatgatcaca
gccaacatttgcgcgggtaaaacgctgcaaggccatttcggcaccggcgtatttaactgc
catgcaggcttcaagccagagaagattgccgatgttgtggagctggttaacccagaaggt
acgttggagttcacggctgagtcgattgccactcgtgaaggttttgctgcactccgccgc
tggttaagtaaacaagaaacgacttatcttgataaccgcattcgcaaattccaaacctac
agtgaagtgagcaaccagcctttgccacactatgcgatgggccttgatatctacgcaact
tggacgtctccaattcgtaaatatggcgatatgatcaaccatcgtatgcttaaggcttta
attctaaacaaagagcctgtgcaaaaaccggatgatagtgtcggcgaagagcttgctcta
caccgcaagcatcacaaaattgcagaacgtaatgttgcagactggctgtatgctcgcact
ctagcagacgctccagaaaatcaaacgctgtttaccggtgaaatcttcgatattaaccgt
gctggtatgcgcatccgtttacttgagaatggcgctgcggcattcatccctggttctctt
attattgataataaagaaagaattgagtgcaatggtgacctaggtactgtttctatcgat
aaagaagtggtatacaaactgggagacgttcttgaagtcgtgttagctgacgttaaccag
gagaacagaagcctggttgcgaaacctacccaagtattcgctgaattacccgtggtagaa
gaaactcagaattaa
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