Vibrio vulnificus YJ016: VV0448
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Entry
VV0448 CDS
T00150
Name
(GenBank) DNA-directed RNA polymerase specialized sigma subunit
KO
K03092
RNA polymerase sigma-54 factor
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy02020
Two-component system
vvy02040
Flagellar assembly
vvy05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VV0448
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VV0448
09142 Cell motility
02040 Flagellar assembly
VV0448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvy03021
]
VV0448
Transcription machinery [BR:
vvy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VV0448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
BAC93212
UniProt:
Q7MPB6
LinkDB
All DBs
Position
I:complement(437006..438469)
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AA seq
487 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEEHQEEAQLNG
EDKAINEGSDSDDFSVEIDIPDSSDVIEKSEISSELEIDTTWDDVYSANSGNTGIALDDD
MPVYQGETTETLHDYLQWQLDLTPFSDTDRMIAFAIIDAVDDTGYLTISPEEILESLNSV
DIELDEVEAVRKRIQQFDPLGVASQNLQECLLLQLATFPTETPWLAEAKMVLSHHIDALG
NRDYKLIVKEAKLKEEDLRETLKLIQQLDPRPGSKINAIEPEYVIPDVSVFKEHGKWSVA
INPDSIPKLKVNQQYAQLGKGSSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEH
QHDFFEYGEEAMKPMVLNDVATAVEMHESTISRVTTQKFMHTPRGIFELKYFFSSHVSTD
SGGECSSTAIRALIKKLVTAENSAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAPS
SQRKRLL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcattacaactcaagctaggtcaacagttagccatgacgcctcagctccag
caggccatacgtttgctgcagctgtccaccttggatttacagcaagaaatccaagaagcg
ctggaatcaaatcccttattggaagtggaagagcatcaagaagaagcgcaactgaatggc
gaagacaaagcgatcaatgaaggttccgattctgatgatttttctgttgagatcgacatt
cccgacagctctgatgtgattgaaaaatccgagatcagtagcgaactggaaatcgacacc
acctgggatgacgtttacagtgccaactctggcaatacgggcatcgcactcgacgatgac
atgccggtctatcaaggtgaaacgacggaaacactgcacgactacttacagtggcaactg
gatttaaccccgtttagcgatactgaccgcatgatcgcctttgccatcattgatgccgtc
gacgacactggctacctcactatcagccctgaagagatcttagaaagcctgaacagcgtc
gatatcgaactcgacgaagtggaagccgtacgcaaacgcatccaacagttcgatcccctg
ggtgtcgcgtcgcaaaacctacaagaatgcttgctgctacaactggccacatttccgacc
gagaccccttggctagccgaagccaaaatggtcctaagccatcacattgatgcactgggc
aatcgcgactacaagctgatcgtcaaagaagcgaagcttaaagaagaagacctacgtgaa
acgctcaaactgatccagcaacttgatccaaggcctggcagtaagatcaatgccatcgaa
cctgaatacgtgattccagatgtatccgtatttaaagagcatggcaaatggagtgtcgcg
atcaatccagacagcattccaaaattaaaagtaaatcaacagtatgcgcaactaggcaaa
ggcagcagcgccgatagccagtacattcgcagcaatttgcaagaggcgaaatggttaatt
aagagccttgagagcagaaacgagacgctgctcaaagttgcacgttgcatagttgaacat
caacatgatttcttcgagtatggggaagaagcaatgaaacctatggtgctaaatgatgtg
gcaaccgcggttgagatgcatgaatccaccatctcacgcgtgacaacccagaagtttatg
cacacgcctagaggtatctttgaattgaaatatttcttctctagccatgttagtacggat
agtggaggagaatgttcatcgacagcaattcgcgcactcattaagaagttagtcactgcc
gaaaacagtgcgaaaccactgagtgatagcaaaattgctgccttactggcagaccaagga
atccaggtcgcacggcgaacgatagctaagtaccgcgagtccttaggcattgccccatct
agtcagcgaaaacgcctactttag
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