Vibrio vulnificus YJ016: VV2365
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Entry
VV2365 CDS
T00150
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VV2365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvy03400
]
VV2365
Enzymes [BR:
vvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VV2365
DNA repair and recombination proteins [BR:
vvy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
VV2365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
T1R_D3-like
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAC95129
UniProt:
Q7MIZ8
LinkDB
All DBs
Position
I:2393284..2396745
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AA seq
1153 aa
AA seq
DB search
MTYQPILQVSTPKGAGDKKYLGQLPGASLALSVAELANTHANHTVLIVPDPQTALKLQSE
IEQFYTAHVTIFPDWETLPYDNFSPHQEIISDRIATLYQLPSQTDGITIVPVSTLLQRQS
PRDFLLQHTLMVNVGDRYSLEKLRLQLDNSGYRHVDQVFGPGEYASRGSILDLFPMGSRD
PYRIDFFDDEIDTIRTFDPENQRSIEEIQQIRLLPAHEFPTTEAAIEEFRIRWRSQFDAR
REPESVYMQVSKGVWPAGIEYWQPLFFEQTETLFDYINRDSQLLVLGDIEPTIDHFLKDV
DYRYDQKKVDPLRPLLKPEQLWLKKDELYAHLKNFGQTWLCVDAIDEKAGRSNQPLSPLP
TLAVQQQNKEPLAQLRQFSESFSGKIIFSVESEGRREALSELLQGVKLKPHACASVSEAL
AHNHKFTLVIGASEHGFIHNTLNFAFICESDLLGDRVIQRRKKDKRNVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLETLEAGGIKAEYVMLEYQNEAKLYVPVASLNLISRYSGGAE
ESAPIHKLGSDAWTRARRKAAEKVRDVAAELLDVYAKRELKPGYKFVLDRGQYATFKSGF
PFEETDDQSMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNDKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQIMEDVANGKVDILVGTHKLLSSD
LKFSDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRESDDAVVREAILREIMRGGQVYFLHNQVETIEKVAEDLTKLVPEAR
VTIAHGQMRERELERVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKSMTKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSIGFTLYMEMLEQAVQALKEGKEPALDDLLREQTEVEIRIPALLPDDYI
PDVNTRLSMYKRVASVADLEELNEVKVELIDRFGLLPEAAKNLLAVAELKLSAHRIKAKK
IEAHDKGGFIEFYPHADINPAYLVRLLQSQPKKFAMEGPTKFKFSVPLTDRRQRIQFIQD
LLNEFNQNLLPVS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacttatcaaccgattttacaagtctccacgcccaaaggggcgggagacaaaaaatac
ttgggccagttgcctggcgcctcactggccctttctgtggccgaactggcaaatacccat
gccaaccacacggttctcattgttccagatcctcaaaccgcgctgaagttgcaaagcgag
atcgagcagttttacaccgctcacgtgacgattttccccgattgggaaacgctgccatac
gataacttctctcctcatcaagagatcatttccgatcgtatcgccacgttatatcagctt
ccctctcagaccgatggcattaccattgtgccggtgagcacgctactgcaacgtcaatct
ccacgcgattttctgctgcaacatactttgatggtcaatgttggtgatcgctactcgctc
gaaaaactgcgcctacaacttgataactctggctaccgtcatgttgatcaagtatttggc
cctggggaatacgctagccgcggttcgattcttgatctctttccgatgggcagtcgtgac
ccttaccgtatcgatttctttgatgatgaaatcgacaccattcgcacgttcgaccctgag
aatcaacgttcaattgaagagatccagcagatccgcctactgcctgcgcacgagttccca
accaccgaggcggcaatagaagagtttcgtatccgctggcgcagccaatttgatgcccgc
cgtgagccagaatcggtctatatgcaggtgagcaaaggcgtttggcctgcggggattgaa
tactggcaaccccttttctttgaacaaacggaaacgctgtttgactacatcaatcgtgat
tcacaactgctggtgttgggggatatcgaacccaccatcgatcatttcctaaaggatgtg
gattaccgctacgatcagaaaaaagtcgacccgctgcgcccactgctgaaaccagagcaa
ctttggcttaaaaaagatgaactgtatgcgcatctgaaaaattttggccaaacctggctg
tgtgttgacgccatcgacgaaaaagccgggcgttccaaccagccattgagcccactgccg
actctcgcggtgcaacagcaaaataaagagcctttggcgcagttgcgtcagtttagtgaa
agtttctcaggcaaaatcatcttttccgttgaatcggaagggcgtcgcgaagcgctcagt
gagttgctacagggcgttaagctcaagccacacgcttgtgcctcagtcagtgaagccctt
gcacataaccataaattcactttggtcattggcgccagtgagcacggttttattcacaac
acgctgaacttcgcctttatttgtgaaagcgatttgcttggcgatcgcgttatccaacgt
cgcaaaaaagataagcgcaacgtcaacagcgataccgtgattcgtcatctggcggagctg
aaacctgggcaacctgtggtacacatcgaccacggtattggtcgttatattggcctggaa
acccttgaagctggcgggatcaaggctgaatacgtgatgcttgagtaccaaaacgaagct
aagctctacgtgcccgttgcttcccttaacttaatcagtcgatactctggtggtgcagaa
gagagcgcgccgattcacaaactgggcagcgatgcttggaccagagcacgtcgcaaagcc
gctgagaaagtgcgagacgttgccgctgagcttttggacgtttatgccaaacgtgaactc
aaacctggttacaaatttgttttggatcgtggccaatacgcgaccttcaaatcgggtttc
ccatttgaagagactgatgaccaatcgatggccatcaacgcggtgctgtctgacatgtgt
caagccaaagccatggaccgcttagtgtgtggtgatgtaggttttggtaaaaccgaagtg
gcgatgcgcgctgcgtttgttgcaaccgataacgacaaacaagtggcggttttggtcccg
accaccctgcttgctcaacagcatttcgaaaacttccgtgatcgttttgccaacctgcca
attcgcgtcgaagtactgtcgcgttttaagtcggcaaaagaacaaaagcagatcatggaa
gatgtggccaacggcaaggtcgatatcttagtgggcacacacaaactgctctcttccgac
ctaaagttcagtgatcttggactgttgatcgtcgatgaagagcatcgctttggtgtgcgc
caaaaagagaaagtgaaagcaatgagagccgatgtcgacattctcactctcacggccacc
cctattccgagaacgctcaacatggcgatgagtggcatgcgcgatttgtcgattattgcc
accccacccgctcgccgtttagccatcaaaacatttgtccgcgaaagtgacgatgcagtg
gtccgcgaagcgattctgcgtgaaatcatgcgtggtggacaagtgtacttcttacacaac
caagtcgaaaccatcgagaaagttgcagaggacctgaccaaactggtgccagaggcacgc
gtcaccatcgctcacggtcaaatgagagaacgcgagttggagcgtgtgatgaacgatttc
taccatcagcgctttaacttattggtgtgtaccaccatcattgagacgggtatcgatgtg
ccaaccgccaacaccatcatcatggatcgcgcagacaatctcgggcttgctcagttgcat
caactccgtgggcgtgtgggtcgctcgcaccaccaagcgtacgcgtacttgctcacgcca
cacccgaaatccatgaccaaagatgccattaaacgcttggatgccatcgcttctttggaa
gatctcggggctggtttcaccctcgccacgcacgatttagaaattcgcggtgcgggtgaa
ctgctcggtgatgagcaaagtggtcaaattcaatcgatcggttttacgctgtatatggag
atgcttgagcaagccgtgcaagcattgaaagaaggtaaagaacctgcgctggatgatcta
cttcgcgagcaaactgaggtggaaattcgtatcccagccttgctgccagacgattatata
ccagacgtcaacacacgtttgtcgatgtataaacgcgtcgccagtgtggccgatttagaa
gagctaaacgaagtcaaagtcgagctcatcgaccgattcggcttactaccggaggcggcg
aaaaatcttcttgctgtcgcggagctcaaactaagcgcccaccgaatcaaggcgaaaaag
atcgaggctcacgacaaaggtggatttatcgagttttatccacacgctgacataaaccca
gcttatttggttagactactgcaatctcagccgaaaaaatttgcaatggaaggtccaact
aagtttaagtttagcgtaccattgacggacagacgccaacgtattcagtttatccaagat
ttgctgaatgagtttaaccagaatttattaccagtgagctag
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