Vibrio vulnificus YJ016: VV2613
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Entry
VV2613 CDS
T00150
Name
(GenBank) ATP-dependent exoDNAse alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VV2613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvy03400
]
VV2613
Enzymes [BR:
vvy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VV2613
DNA repair and recombination proteins [BR:
vvy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VV2613
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
AAA_11
NAT10_TcmA_helicase
UvrD-helicase
Viral_helicase1
AAA_22
SLFN-g3_helicase
nSTAND3
AAA_16
DEAD
NPHP3_N
UvrD_C
AAA_28
NTPase_1
CbiA
TrwB_AAD_bind
ResIII
MukB
DUF87
T2SSE
ATPase
AAA_7
AAA
Motif
Other DBs
NCBI-ProteinID:
BAC95377
UniProt:
Q7MIA4
LinkDB
All DBs
Position
I:complement(2636012..2638126)
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AA seq
704 aa
AA seq
DB search
MMLNGSLQATLSMLEQQAQQGYLRLLDYQFARFIGEQSQHSGLALLAAAVSAELGKGHIC
LPLLDELGQVCELASKIGLFGEAATELNAQLQLIDWRALLQTSGLVGTQGEAVPLMFDGE
RVYLHRYWHYEVVLAQKLNQLSHGIELNASSAASLSALLDRLFARDYRFLFETLIAAQAS
GSTQVQRQQWVCDFLDVVEEHRLDWTAIEQVLSQVSKVSDLNALDHLVPHAACINWQKVA
AAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQAGAQTPTIRLVAPTGKAAARLTESIG
KAVQSLAVEPSLKALIPTEASTLHRLLGAIPGSAEFRHHSQNPLHLDVLVVDEASMVDLS
MMYKVIDALPKHARLILLGDKDQLASVEAGAVLGDICAFSASGYSAEQAATLAKLTGYQA
LPKSASRLAPVADSLCMLQKSYRFDARSGIGQLAKAINAGSVAALESVWQREFSDIARHP
LDASHYNHMLQTLVSEYSHYLARIALTQQHLEPKERESSAERAKAGLNLFHRCRLLCAVR
EGNFGVAGLNLRIERALAARNLIKVKDEIWYHGRPVMVTRNDYALGLYNGDIGICMWDDT
DEDPRLKVYFELADGSVKAVLPSRVPEHETAYAMTIHKSQGSEFDFTLMILPADFSPILT
RELIYTGITRAKKRLALYADLQVLKRGMKIKTQRASGLPHRLGQ
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgaatgggtcactccaagcgacgctgtcgatgctggaacagcaagcccaacaa
ggctacctgcgcttattggattatcaatttgcgcgctttattggtgagcagagtcagcac
agcggattggcgctgttggccgctgcggtcagcgccgagttaggcaaagggcatatttgc
ttgcctctgttggatgaacttggccaagtctgtgaattggccagcaaaattggcctgttt
ggtgaggcggcaaccgagctgaacgcccagcttcagctgatcgactggcgagcgttgctg
caaaccagtggcttggtcggcacgcaaggggaagcggtgcccttgatgttcgatggtgaa
cgagtttatctgcatcgctattggcactatgaagtcgttttggcgcaaaaacttaatcaa
ttaagccacggtattgagcttaatgccagctcggcggcatcgttgtccgcactgctggat
cgattgttcgcgcgagattaccgctttttgttcgaaacgctgattgccgcgcaagcgagc
ggcagtacccaagtgcagcgacagcaatgggtgtgtgattttctcgacgtggttgaagag
caccgtttggattggacggcgattgaacaagtgctgagccaagtaagcaaagtctcagat
ctcaacgcgctggatcatctcgtgcctcatgcggcctgcattaattggcaaaaggtggct
gccgcagtggcgttgacgcgtcgttttgccgtgatctctggggggccgggaacaggcaaa
accaccaccgtcacgaaattgttggcggcgctgattgagcaagctggagcgcaaacgccc
accattcgtttggtggcgccaacgggtaaagcggcggcgcgtttgaccgaatccatcggt
aaagcggtgcaatctttagccgtagagccgagtttaaaggcgttaatccccacagaagcc
tcaacattacatcgcttgttaggcgcgatccccggcagtgccgagtttcgtcatcacagt
caaaacccgctgcatttggatgtactggtggtggatgaagcctcaatggtcgatctttcg
atgatgtataaagtgattgacgcgctgcctaaacatgctcgtttgattttactcggtgat
aaagatcagttggcctccgttgaagcgggggcggtgctgggggatatctgcgcattttct
gcttccggatacagcgcagagcaagcggcaacgctcgcgaagttaacgggttatcaagcg
ctgccaaagagtgccagccgtttagcgccagtcgctgatagcttgtgtatgttgcaaaag
agctatcgttttgacgctcgctcagggattggccaattggcaaaagcgatcaatgcaggt
tcagtggcggcgttagagagtgtatggcagcgagagtttagcgatatcgcgcgtcatcca
ttggatgccagccattacaaccatatgttgcaaacactagtgagtgagtactcacattat
cttgctcgcattgccttaactcagcagcatcttgaacccaaagagagagaaagcagcgcg
gaacgagccaaagcgggactgaatttgtttcatcgttgccggttactttgcgccgtgcgt
gaagggaattttggtgtggccgggcttaaccttcgcattgaaagagccttagctgcgcgg
aatttgattaaagtgaaggatgagatttggtatcacggcaggcctgtgatggtgacgcgt
aatgattacgcgcttgggctttacaacggcgacattggcatctgcatgtgggatgacact
gatgaagacccgcgtctaaaagtctattttgagttggctgacggcagcgttaaagcggta
ttaccaagccgagtaccagaacatgaaacagcctatgcgatgacaatacataaatcgcaa
ggcagcgaatttgattttaccttgatgattttgccagccgatttcagcccaatactgacg
cgagagctgatctacacgggcattactcgagcgaaaaagcgtttagcgctgtatgccgat
ctccaagtcctgaaacgtggtatgaagataaaaacacagcgagcgagcggcctgccacac
cgtttgggccagtaa
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