Vibrio vulnificus YJ016: VV3181
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Entry
VV3181 CDS
T00150
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VV3181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vvy03021
]
VV3181
03019 Messenger RNA biogenesis [BR:
vvy03019
]
VV3181
Transcription machinery [BR:
vvy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VV3181
Messenger RNA biogenesis [BR:
vvy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VV3181
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
AAA_25
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BAC95945
UniProt:
Q7MGP9
LinkDB
All DBs
Position
I:complement(3268885..3270168)
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AA seq
427 aa
AA seq
DB search
MTKQESTTMNLTELKNKPVSDLVKLGESLGLENLARLRKQDIIFAILKAHAKGGEDIFGD
GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFA
LLKVNTVNDDRPDNARNKILFENLTPLHANERMVMERGNGSTEDITARVLDLASPIGKGQ
RGLIVAPPKAGKTMLLQNIAQSITYNHPECVLMVLLIDERPEEVTEMQRLVKGEVVASTF
DEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAN
ALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEK
RVFPAIDFNRSGTRREELLTKPDELQKMWILRKIVHPMGETDAMEFLIDKLAMTKTNDEF
FDAMRRQ
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
ttgactaaacaagaatccaccaccatgaaccttaccgaattgaaaaacaaaccggtatca
gacctggtcaagcttggcgaaagcttgggtctggaaaacctggcgcgtttacgtaaacaa
gacatcatcttcgcaatcctcaaagcgcacgcgaaaggcggcgaagatatctttggcgat
ggggttctggaaattctgcaagacggttttggtttcctacgtagtgcagacagttcgtac
ctagctggtccggacgatatctacgtatcaccaagccaaattcgtcgtttcaacctacgt
actggtgactcgattgcagggaaaattcgcccacctaaagatggcgaacgttactttgca
ctgttgaaagtcaacacggttaacgatgatagaccagacaacgctcgcaacaagatccta
tttgagaacttgacgccgctgcacgcgaatgagcgtatggtgatggagcgtggtaatggt
tcgacagaagacatcacagcgcgtgtattggatttggcatcgccgattggtaaaggtcaa
cgtggtttgattgttgctccgccaaaagcgggtaaaaccatgctgctacaaaatattgcg
cagagtatcacttacaaccaccctgagtgtgtgttgatggttctactgattgacgagcgt
ccagaagaagtgaccgagatgcagcgtctagtgaaaggtgaagtggttgcttctactttt
gatgagccagcatctcgccacgttcaagtcgcagaaatggttatcgagaaagcgaagcgt
ctcgttgagcacaagaaagatgtggtgattctacttgactcaattactcgtcttgctcgc
gcatacaacaccgttgtcccttcatcaggtaaagtactgacaggtggtgtggacgcaaac
gcactgcaccgtccaaaacgtttcttcggtgcggcgcgtaatgttgaggaaggcggtagc
ttaaccattatcgcgactgcgttggttgacacaggttctaagatggacgaagtgatctac
gaagagttcaagggtaccggtaacatggaactgcatttgaaccgtaagatcgcggaaaaa
cgtgtattccctgcgattgacttcaaccgctctggtactcgtcgtgaagagttgctaacg
aagccagatgaactacagaaaatgtggattctgcgtaagattgttcatcctatgggcgaa
acagacgcgatggaattcctcatcgataagcttgcgatgacgaaaaccaacgatgaattt
tttgacgcaatgcgccgtcaataa
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