Vibrio vulnificus YJ016: VV3183
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Entry
VV3183 CDS
T00150
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VV3183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvy03019
]
VV3183
Enzymes [BR:
vvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VV3183
Messenger RNA biogenesis [BR:
vvy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VV3183
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAC95947
UniProt:
Q7MGP7
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All DBs
Position
I:3270781..3272088
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AA seq
435 aa
AA seq
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MKKTHITEQKFADLGLNPQVVEGLEKKGFEFCTPIQALALPVLLSGQDIAGQAQTGTGKT
LAFLTATFNHLLTTHAHEGRQPTQPRAIIMAPTRELAIQIYNDAEPLIASTGIKAALAYG
GESYDKQLAKLQGGVDVLIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPAPQERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIQEELFYPSN
EDKMALLQTLIEEEWPDRAIIFANTKYKCESIWAHLAADGHRVGLLTGDVPQKKREKILE
QFTQGSVDLLVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFA
CEDYAINLPAIEEYIEHTIPVSDYDSSALIQDLPAPVRTPSARNQQRRTNTGGARSGDRK
SNNRRPRQPRQHKEA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttgggtttaaatccccaagtt
gttgaaggattggaaaaaaaagggtttgagttttgtacccctatccaagccttggcgttg
ccggtactgctctccggccaagacatcgcaggccaggcccaaaccgggactggtaaaacg
ctcgcgtttcttactgctacctttaaccatttgttgaccacacatgcacacgaaggccgt
cagccaacccagccacgtgccatcatcatggcgccaacacgtgagttagcgattcagatc
tacaacgatgctgagcctctaatcgcaagtactggcatcaaagcagccctcgcttacggc
ggtgaaagctatgataagcagttagccaagctacaaggtggtgttgacgttctgatcggc
accactggtcgtattatcgatttttacaagcagcgtgtgtttaacctcaataacattcaa
gcggttgtgcttgatgaagccgatcgcatgttcgatttgggtttcattaaagacattcgt
ttcttgttccgccgtatgccagcaccacaagagcgtctgaacatgttgttctcggcgacg
ctttcttaccgcgtgcaagaattggcgtttgagcacatgcataacccagagcacgttgtg
gttgagcctgaacaaaaaactggccaccgtattcaagaagagctgttctacccttctaat
gaagacaaaatggcgctgctacaaacactgattgaagaagaatggccagatcgcgcgatt
attttcgctaacactaaatataagtgtgaatccatctgggctcatcttgctgccgatggt
caccgtgttggcctgctcactggtgatgttccacagaagaaacgcgaaaagattcttgag
caatttactcaaggttctgtagatctgctcgtggcaaccgacgtggcagctcgtggccta
cacataccgcaagtaacgcatgtctttaactacgatttacctgatgactgtgaagactac
gttcaccgtattggccgtactggccgtgctggtgcaagtggccattcgatcagctttgct
tgtgaagattacgccatcaacttgccagcaattgaagaatacattgagcacaccattccg
gtctcggattacgattcaagcgccttgatccaagatctaccagcgccagtccgtacacct
tctgcgcgcaatcagcagcgccgcacgaacactggcggtgcacgttcaggtgatcgtaag
tcaaacaaccgtcgtccacgacaaccgcgtcaacacaaggaagcgtaa
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