Vibrio vulnificus YJ016: VV3187
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Entry
VV3187 CDS
T00150
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VV3187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvy03019
]
VV3187
03400 DNA repair and recombination proteins [BR:
vvy03400
]
VV3187
Enzymes [BR:
vvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VV3187
Messenger RNA biogenesis [BR:
vvy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VV3187
DNA repair and recombination proteins [BR:
vvy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VV3187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BAC95951
UniProt:
Q7MGP3
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All DBs
Position
I:complement(3274926..3276803)
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AA seq
625 aa
AA seq
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MLSRPPSRPILRLFMTSTLLADPSDASMTPQSVLSQVFGYQTFREGQQSVIEAAVEGKDS
LVIMPTGGGKSLCYQIPALVRPGITLVISPLISLMKDQVDQLKANGVAAECVNSTLSRDA
LLSVYNRMHAGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHDFRPEYA
ALGQLKHHFPHVPFMALTATADDATRKDILSRLHLNEPHVYLGSFDRPNIRYDLVEKHKP
VSQVIRYLESQKGNCGIIYCGSRKKVEMLTEKLCNNHIRAAGYHAGMDADERAYVQEAFQ
RDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPA
DITWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDIC
LDPPKHFDATEEARKALSCVYRVNQSFGMGYVVEVLRGMQNIRIREHGHDKISTYGLGRD
HSHDYWVSIFRQLIHKGLLFQNITRNSTLQLTEEARPLLRGDMTLELAVPRLDTAARSAK
ADKLSNKHYDKKLFAKLRKLRKSIADEEEIPPYVVFSDATLIDMAEILPTSYGEMLAVSG
VGQRKLEKYADPFLDLIQEHITHYG
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
gtgctttcgagaccaccatcaagaccaatactgagactgttcatgacttccacgctgctt
gccgacccttccgatgcctcgatgacgccccaaagcgttttatcacaggtgttcggctat
cagaccttccgtgaggggcagcagtcggtgatcgaggcggctgttgagggaaaagatagt
ttggtgatcatgcccaccggtggcggtaaatcgctgtgctatcaaattcctgctctcgtg
cgcccgggcattaccttagtgatctcccctttgatttcgctgatgaaagatcaggttgac
caacttaaagccaacggtgtggcggcagaatgtgtcaactcgaccttatcacgtgacgct
ttactcagcgtctacaaccgcatgcacgcgggacagctcaaattggtgtacgtttcacca
gagcgggtgttgatgcgtgactttattgagcggctggaaaatttgcccttggcgatgatt
gctgtcgatgaagcgcactgtatctctcagtggggacacgatttccgccccgagtacgcc
gcgttagggcaattgaagcatcattttcctcacgtgccgtttatggcgctaacggccacg
gcggacgatgcgacgcgcaaagacattttaagtcgcctacatcttaatgagcctcacgtt
tatctcggcagttttgatcgccccaacattcgttatgacctagtggagaagcacaagccg
gtctctcaagtgattcgctatttggaaagccagaaaggcaattgcggcattatttattgt
ggtagccgtaagaaagtcgaaatgctgaccgagaaactgtgcaataaccatattcgagca
gcgggttatcacgcgggaatggacgccgatgagcgcgcttatgtgcaagaagcgtttcaa
cgagacgacatccagattgtggtggcgacagtggcctttggtatggggatcaacaaaccc
aatgtgcgctttgtggtgcattttgatattccacgcaatatcgaatcgtactatcaagag
acgggtcgagcagggcgtgatggcctgcccgccgaagcaatgatgctctacgatccggca
gacatcacttggttgcgccgcatgttggatgagaaagacgacggcccgcaaaaacaagtg
gaaagtcataagctcaatgccatgagtgcctttgctgaggcgcaaacttgtcgtcgccaa
gtgctgctgaactattttggtgaataccgcgagaagccttgcggcaattgcgatatttgc
ttagatccgccgaagcattttgatgcgacggaagaagctcgcaaagcgttgtcgtgtgtt
tatcgcgttaatcaaagctttggtatgggctacgtggtggaagtgttgcgtgggatgcaa
aacattcgtatccgggaacatggccacgataagatttcgacctacggtttagggcgtgat
cacagccatgactattgggtgagcattttccgccaactgatccacaaagggctgctgttt
caaaacatcacccgcaactcaaccttgcagttaaccgaagaagcaaggccattgctgcgt
ggtgatatgacgttggagctggcggtgccacgtttggatactgccgcacgcagtgccaaa
gcagataagctatcgaacaaacattacgacaaaaagctgttcgccaaattgcgtaagcta
cgcaaatcgattgccgatgaggaagagatcccaccgtatgtggtgttcagtgatgccacg
ctgatcgacatggctgaaatattgccgacctcatatggtgaaatgctcgcggtgagcggc
gtcgggcagcgcaaactagaaaaatacgcggatccgtttttagatttgattcaggagcac
atcactcattatggatga
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