Vibrio vulnificus YJ016: VVA0587
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Entry
VVA0587 CDS
T00150
Name
(GenBank) putative exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vvy
Vibrio vulnificus YJ016
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvy03400
]
VVA0587
DNA repair and recombination proteins [BR:
vvy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VVA0587
Archaeal homologous recombinant proteins
VVA0587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
AAA_5
Motif
Other DBs
NCBI-ProteinID:
BAC96613
UniProt:
Q7MET3
LinkDB
All DBs
Position
II:660305..663370
Genome browser
AA seq
1021 aa
AA seq
DB search
MKPLKLTMQAFGPFAEREVIDFTQLGDNPLFLINGPTGSGKTSILDAICFALYGETTGNE
RQGMQMRSDLASIHLATEVTLEFLLHGKRYKVIRLPEQEAAKARGEGTTTKKHTAALYLC
QDDEELITSKTAEVKTRVTELIGLNETQFRQVMVLPQGKFRDLLLASSKDREEIFGQLFQ
TEIYKRIEWALKDKANAISKAKEEFDNQIRGALEVADVSDEQALKESLADKKTQLTQWQE
TEKHALERYNSAKQSLSTAKALVEDFNKLALAKVNLDAHLAKNDQMHQLAQKLEQARQAQ
QLDAPYRQWKNALNDVHAQQGKIDELNASLNALFLQSNELEQQCLQAQKNAEQVPQLQQQ
TYELETVKNKLVEKVQFEQEIIRLEEEVQKFAHQLKRVQEHKVVMQQELTSASDAFEKAK
QQTAEIPRLEARESELKRQISDYEQYQNLNKVLQNLLAQTEQKEQLHQQAKQHWLNAQQS
ADSIELSWHNGQAAILAQRLHQGEACPVCGSLEHPQKAQFVGEPVHKQQVEQAREQEKTA
LAQLNQHHQELELHLAQVKQQQKAIEEKATQLGELLKSPLETLQAQALEIRHTLKQLQGL
DLAQQESHVKQLTERCAKGEEMEKELAQQHISSSATLKEKTQQLAKFSQQIAAQFSHVAQ
VEQEIAQIKQQTTALQTAKETSQKRFDEIQQTLAARQSEVKAHSEMLLQTQQRSEQNQAA
WLEALSASSFDDEPHYLALRVEPEQIEQWKREIEQHQQQATRLEQSYHDLKERLKDLQVP
ELEQLELLVTTTEQQYQQNKNELDAVRSLVAKLETVQAKIAELHTHNHRLEEEYKVFGTL
YDVASGKTGSRISLHRFVLGVLLDDVLIQASHRLALMSKGRYQLTRKTEGFKGTAGRGLD
LIVEDSYTGKSRDVATLSGGESFMAALSLALGLSDVVQSYSGGIRLETLFIDEGFGSLDP
ESLDLAIQTLVELQQTGRMIGVISHVSELKEQMQQRIDVIPSRVGSSISLKSAFAANAST
S
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccactcaaacttaccatgcaggcgtttggtccatttgctgaacgtgaagttatt
gattttacccaactgggtgacaacccactgtttttaatcaatgggcccactggttcggga
aaaacctctatcttggatgcgatctgttttgccctttatggcgaaaccacaggcaatgag
cgccaaggtatgcagatgcgttcagatttggcctctatccatctagccacggaagtgacg
ttagagtttctgctacatggaaaacgctataaggtgattcgcctacctgagcaagaggcg
gcaaaagcgcgtggtgaaggcaccaccaccaaaaaacacactgccgcgctttatctttgc
caagatgatgaagagctgatcaccagcaagacggctgaagtaaaaacgcgcgtgacggaa
ttgattggcttgaacgaaacgcagtttcgtcaagttatggtgttgccacagggaaaattc
cgcgatttgctgctggcgagttccaaagatcgtgaagagatttttggccaactgttccaa
accgaaatttacaaacgcattgaatgggcgctaaaagacaaagccaatgcgattagtaaa
gccaaagaagagtttgataatcaaattcgtggggcgctagaggtggcggatgtcagtgat
gagcaggcgctcaaagagtcgcttgcagacaaaaaaacgcaactgacgcagtggcaagag
acggagaaacacgctctcgagcgttacaattcggccaagcaatccctttccacggccaaa
gctctggtcgaggattttaacaaattggctttggccaaagtgaatttagatgcccatttg
gcgaaaaatgatcaaatgcatcagttggcgcaaaagctggaacaagcacgacaagctcag
cagcttgacgcaccgtatcgccagtggaaaaacgcactcaatgatgttcatgctcaacaa
ggcaaaattgacgagcttaacgcatcgttaaacgcactgtttttgcagagcaatgagctg
gaacaacagtgtttgcaggcgcagaaaaatgccgaacaagttcctcagctacaacagcaa
acgtatgaattagagacggttaaaaacaagctggtggaaaaagtccagtttgaacaagag
atcattcgtcttgaagaagaagtacagaaatttgctcatcaattaaagcgcgtgcaagaa
cataaagtcgtgatgcagcaggagctgacgtctgccagtgatgcgtttgaaaaggcaaag
cagcaaacggcagagataccgcgacttgaagcgcgagagagtgagctaaagcgtcagatc
agtgactatgagcaataccagaaccttaataaagtccttcagaatttactcgcgcaaact
gaacaaaaagagcagttacatcagcaagccaagcagcattggctcaacgcccaacagtct
gcggatagcatagaactgagttggcataatggccaagccgctattttggctcagcgcctt
catcaaggggaagcttgcccagtttgtggtagtcttgaacacccacaaaaagcgcagttt
gtcggtgagcctgtgcataaacagcaagtagaacaggcccgtgagcaggaaaaaaccgcg
ctcgcccagctcaatcaacatcaccaagagctggagctgcatcttgcacaagttaagcaa
cagcagaaagcgattgaggaaaaagcaacacaactcggtgagctgcttaagagtccgtta
gaaaccttgcaggcgcaagctcttgaaatccgtcacacactcaaacagctgcaagggttg
gatctcgctcagcaagaaagtcatgttaaacaactgaccgagcgctgtgcgaaaggcgag
gagatggaaaaagaactcgctcagcaacatatttctagcagcgcaacgttgaaagaaaaa
acgcaacagttagcaaagttcagccaacaaattgccgcgcaatttagccatgttgcccaa
gttgagcaggaaattgcgcagatcaagcaacaaacgacggctttacaaacggcaaaagag
acgagccaaaagcgttttgatgagattcaacaaacgcttgccgcgcgtcaaagtgaagtt
aaggcacacagtgagatgttgctgcagactcagcagcgcagtgaacaaaaccaagctgca
tggttggaggcgttgtctgcatcgtcatttgacgatgaaccgcactatttggcgttgcgt
gtcgagccagaacagatcgaacaatggaaacgtgagattgagcaacatcaacagcaggcg
acacgtttagagcagagttatcacgaccttaaagagcgtttgaaagatctgcaagtgccc
gagcttgagcaattagagctgttggtgacaacgacagaacagcagtatcaacagaacaaa
aatgagttggatgcggtgcgttcactggtggcgaagcttgagaccgtgcaagcgaagatc
gctgaactgcacacgcataatcatcgccttgaagaagagtacaaggtttttggcacgctc
tacgatgtggcgagcggcaaaacaggcagtcgtattagcttgcaccgttttgtgttaggg
gtgctgctggatgatgtactgattcaagcttcgcatcgtttggcattaatgagcaaaggt
cgctaccagttaacgcgaaaaaccgaagggtttaagggcactgcgggtcgcgggctcgat
ctgattgtggaagacagctacaccggaaaatcgcgtgatgttgccactctctcaggtggt
gaatcgttcatggccgcactttccctagcactgggtttatcggatgttgttcagtcatac
agtggtggcattcgtttagagactttgtttattgatgaaggctttggtagcttggatcct
gaatcccttgatcttgcgattcaaaccttggtggagttgcagcaaacaggccggatgatc
ggggtgatttcccatgtgtcagagttgaaagaacaaatgcaacaacggattgacgtgata
ccgtcgcgagtgggctcttcgattagccttaagtccgcttttgccgctaatgcctcaaca
agttga
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integrated database retrieval system
