Vibrio vulnificus YJ016: VVA0656
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Entry
VVA0656 CDS
T00150
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vvy
Vibrio vulnificus YJ016
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vvy03016
]
VVA0656
Enzymes [BR:
vvy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VVA0656
Transfer RNA biogenesis [BR:
vvy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VVA0656
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF2274
DUF7716
Motif
Other DBs
NCBI-ProteinID:
BAC96682
UniProt:
Q7MEL4
LinkDB
All DBs
Position
II:complement(738229..740265)
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AA seq
678 aa
AA seq
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MIIVCPISNISLVKMFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDSKTSFFI
PPAYMKKCMHGDKVIAIIRTENEREVAEPQELVEQMLNRFIGRVKMFKGKLNVVPDHPQL
KKMSLKAKTKKGLNPQEFAEGDWVVGHLIRHPLKDDNGFFVEISEKITDADDKIAPWWVT
LAENDLPNSEPAGIDDWQIKDDADLERIDMTHIPFVTIDGESTKDMDDALYAKKNDAGDF
ELTIAIADPTAYITPDDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIEGEIRPAL
CCTVTVSKDGVIGDDIQFFAANIKSHARLAYDNVSDWLETGSCEKWQPSEEIAAIVRDLY
EFSQARAEWREKNAVVFPDRPDYRFELSEDNDVVAIHADMRRSANRLVEESMITANICAG
KTLQAHFGTGVFNCHAGFKPEKIADVVELVNPEGTLEFTAESIATREGFAALRRWLSKQE
TTYLDNRIRKFQTYSEVSNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKALILNKEP
VQKPDDSVGEELALHRKHHKIAERNVADWLYARTLADAPENQTLFTGEIFDINRAGMRIR
LLENGAAAFIPGSLIIDNKERIECNGDLGTVSIDKEVVYKLGDVLEVVLADVNQENRSLV
AKPTQVFAELPVVEETQN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgattatagtgtgcccaatttcaaacataagtttagtaaagatgtttcaagataaccca
cttttagcccagctcaagcaacaaattcaggaaaatctgccaaagaaagaaggcacgatt
aaagcaaccgaaaaaggttttggctttctcgaagtcgatagcaagacaagtttctttatt
ccaccagcctacatgaagaaatgtatgcacggtgataaggtgatcgccattatccgcacc
gaaaacgaacgcgaagttgccgagccacaagagcttgttgagcagatgctaaatcgcttc
atcggtcgtgtgaaaatgttcaaaggcaaattgaatgttgttcctgatcatccgcaactg
aagaagatgtctctcaaagccaaaacgaagaaaggtcttaaccctcaagaatttgctgaa
ggcgactgggttgtcggccatttgatccgtcacccactaaaagatgacaacggtttcttc
gtggaaatcagcgaaaaaattaccgatgccgatgacaagatcgcaccttggtgggtgacg
ctggcggaaaacgacctgcctaactctgagcctgccggtatcgacgattggcaaattaaa
gacgatgcggaccttgaacgtatcgacatgacacatatcccttttgtgaccatcgatggt
gagtcaacaaaagacatggacgatgcgctttacgcgaagaaaaacgacgctggcgatttt
gaattgacgattgccattgccgatccaaccgcttacatcacaccagatgatgaaatggac
aaggttgcacgtgagcgtggctttaccatttatctgccaggacgcaatatcccgatgttg
cctcgtgaccttgctgatgaactgtgttcgctaatcgaaggtgaaatccgccctgccctt
tgctgcacagtgaccgtcagtaaagacggcgtgattggcgatgatatccagttctttgcg
gcaaacatcaagtcgcacgcccgtttggcgtatgacaatgtctccgactggcttgaaaca
ggcagctgtgaaaaatggcagccaagcgaagaaattgctgccatcgtgcgtgacctgtat
gaattctcgcaagctcgcgctgaatggcgagagaagaatgcggtagtcttcccagatcgt
cctgattaccgttttgagctgagtgaagataacgatgtcgttgcgattcacgcagacatg
cgccgcagcgcaaaccgcttggttgaagagtcgatgatcacagccaacatttgcgcgggt
aaaacgctgcaagcccatttcggcaccggcgtatttaactgccatgcaggcttcaaacca
gagaagattgccgatgttgtggagctggttaacccagaaggtacgttggagttcacggct
gagtcgattgccactcgtgaaggttttgctgcactacgccgctggttaagcaaacaagaa
acgacttatcttgataaccgcattcgcaaattccaaacctacagtgaagtgagcaaccag
cctttgccacactatgcgatgggccttgatatctacgcaacttggacgtctccaattcgt
aaatatggcgatatgatcaaccatcgtatgcttaaggctttaattctaaacaaagagcct
gtgcaaaaaccggatgatagtgtcggcgaagagcttgctctacaccgcaagcatcacaag
attgcagaacgtaatgttgcagactggctgtatgctcgcactctagcagacgctccagaa
aatcaaacgctgtttaccggtgaaatcttcgatattaaccgtgctggtatgcgcatccgt
ttacttgaaaatggcgctgcggcattcatccctggttctcttattattgataataaagaa
agaattgagtgcaatggtgacctaggtactgtttctatcgataaagaagtggtatacaaa
ctgggagacgttcttgaagtcgtgttagctgacgttaaccaggagaacagaagcctggtt
gcgaaacctacccaagtattcgctgaattacccgtggtagaagaaactcagaattaa
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