Vibrio vulnificus YJ016: VVA0731
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Entry
VVA0731 CDS
T00150
Name
(GenBank) DNA and RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vvy
Vibrio vulnificus YJ016
Pathway
vvy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vvy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VVA0731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vvy03019
]
VVA0731
Enzymes [BR:
vvy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VVA0731
Messenger RNA biogenesis [BR:
vvy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VVA0731
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
P-loop_SecA
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAC96757
UniProt:
Q7MED9
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All DBs
Position
II:832042..833298
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AA seq
418 aa
AA seq
DB search
MTNTFIELGLDSSLSDHLSQLGFNTPTPIQQQAIPHLLQGRDVLAAAQTGTGKTAAYGLP
LIQMLSRQSREETAPKHPRALILAPTRELAQQVFDNLKQYAQHTELAIVTVYGGTSIRVQ
QEQLAKGVDILIATPGRLLDHLFTKKTSLNQLQMLVLDEADRMLDMGFLPDIQRIMKRMP
EERQTLLFSATFETRVKALAYRLMKEPVEVQVAAANSTADTVKQMVYPVDKKRKSELLAY
LIGSRNWQQVLVFTKTKQGSDALVSELKLDGIKAASINGDKSQGARQKALDDFKSGKVRA
LIATDVAARGLDIAQLEQVVNFDMPYKAEDYVHRIGRTGRAGQTGLAVSFMSRDEEYLLQ
AIENLLDTRLPQEWLAGFEPSEKENYVEDTPSKRTSRSAEKRKLKQKLKIHQGRGKKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatactttcattgagcttggacttgattcttcgttaagcgatcatctttctcag
ctaggatttaacacaccaacaccaattcaacagcaagcgattccacatcttttgcaaggt
agagatgtgctggctgccgctcaaacagggacaggaaaaaccgccgcttatggcttgcca
ctgatccaaatgttgtcacgacagtcgcgagaagaaacggcacccaaacatcctagagca
ctgatcttagcgccaacccgagagctggcgcagcaagtgttcgacaatttgaaacagtat
gcgcaacacactgagttggctatcgttaccgtatacggtggaaccagtatccgtgttcaa
caagaacaattggcaaaaggtgttgatatcctcattgcgacgcctggacgtctattggat
catctttttaccaagaaaacctcattgaaccagttgcaaatgctggtgttagacgaagcc
gatcgcatgttggatatgggctttttgcccgacattcagcgcattatgaaaagaatgcct
gaagagcgtcaaacgctgctgttttccgctacgtttgaaacacgtgtcaaagcattggct
tatcgtttaatgaaagagcccgtcgaagttcaagttgccgctgccaacagcaccgccgac
accgttaagcagatggtgtatccggtcgacaaaaaacgcaaaagcgagttgttggcgtat
ctcattggctctcgtaattggcagcaagtactggtatttaccaaaactaagcaaggcagc
gatgctttggtgagtgaattaaagctggatggcatcaaggccgcttccatcaatggcgac
aaatcgcaaggtgcacgtcagaaagcgctggatgattttaaatcgggtaaagtacgcgcg
ttgatcgccaccgatgttgccgcacgcggtttggatattgctcagctagagcaagtcgta
aacttcgatatgccttacaaggcagaagattacgtgcaccgaattggccgaacggggaga
gcagggcaaacggggctcgcagtgtcttttatgtcacgagatgaagaatacttgctgcaa
gcgattgaaaatctgctggatacccgtttacctcaagaatggttagcgggatttgagccc
agtgaaaaagagaactacgttgaagatacacctagcaagcgcactagtcgttcagcagaa
aaacgtaagcttaagcaaaagttaaaaattcaccaaggccgtggtaaaaagcgctga
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