Vibrio ziniensis: G5S32_08905
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Entry
G5S32_08905 CDS
T07449
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vzi
Vibrio ziniensis
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vzi03032
]
G5S32_08905 (topA)
03400 DNA repair and recombination proteins [BR:
vzi03400
]
G5S32_08905 (topA)
Enzymes [BR:
vzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G5S32_08905 (topA)
DNA replication proteins [BR:
vzi03032
]
Prokaryotic type
DNA Topoisomerases
G5S32_08905 (topA)
DNA repair and recombination proteins [BR:
vzi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G5S32_08905 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_2
CFAP410_C
Motif
Other DBs
NCBI-ProteinID:
QIH42106
UniProt:
A0A6G7CJ80
LinkDB
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Position
1:complement(1951550..1954180)
Genome browser
AA seq
876 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTATTAAKKAAAVSKNIS
VEEKARLKKEKERGALIKKMGIDPYHDWEANYQILPGKEKVVAELQKLAKDADHVYLATD
LDREGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQKPGHLNMDGVNAQQARRFM
DRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVERERAIKAFVPEEFWDIHADTITPTK
EEFRLEVAQKDGVAFRPTNEADAMASVAMLQKAVYEVCKREDRPTSSKASAPFITSTLQQ
AASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSTEAVDAVRAYIDSEFGAQYLPAQ
AKVYGSKEGAQEAHEAIRPSSVDVKAEDLDGMEADAHKLYALIWNQFVACQMTDAQYDST
TVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQILPAVKVGDKLAIEKLDPRQQFTK
PPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDE
SFDDLMNYDFTARMEEKLDQIAVGETSWKEVLDSFFNDFSTDLEKAEQEEDHGGMKPNHI
VETSILCPTCSRPMGIRTASTGVFLGCSGYALAPKERCKTTINLGSEEGIINVLEEDVET
AALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCDGYIVEEGEFKVKGYDGPVVECDK
CGSDMVLKNGRFGKYMGCTNDECKNTRKILRNGEVAPPKEEPVHFPELPCENSDAYFVLR
DGASGLFFAASNFPKSRETRAPLVEELAKYKERLPEKFHYLATAPAKDPDGRLAVVRFSR
KGKEHYVRTENDGKPSGWTALYIDGKWDITDKRKNA
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactcgttatagtggaatcaccagccaaggcgaaaacaattaataaatac
cttggaaaagacttcattgttaagtctagtgtcggtcatgtccgcgatctaccaactgca
ggtcaaagcactgcaacaactgctgccaaaaaagccgctgcggtatcaaaaaatatcagc
gtagaagaaaaagctcgtcttaaaaaagagaaagagcgtggcgccctaatcaaaaaaatg
ggtatcgacccatatcatgattgggaagcgaattaccaaattctgccaggtaaagaaaaa
gttgtagcagagctacaaaaacttgcgaaagatgctgaccacgtctacctcgcaaccgat
ttggaccgcgaaggagaggccatcgcttggcaccttcgtgagatcatcggtggcgatgaa
gagcgatacaaacgtgtagtctttaacgaaattaccaaaaacgctatccaacaagctttc
cagaaaccaggacacttgaatatggatggcgtgaatgcgcaacaagcacgccgttttatg
gaccgtgttgtgggctttatggtttctccactactgtggaaaaaagtggctcgtggccta
tctgccggtcgcgtacagtcagtggctgtaaagctgcttgttgagcgtgagcgtgcgatt
aaagcatttgttccagaagagttttgggatattcacgctgacacaattacgccgaccaaa
gaagagttccgccttgaagttgcgcagaaagacggtgtagctttcagaccaacaaacgaa
gctgacgcaatggcgtctgtggcgatgttgcaaaaagcggtttacgaagtctgtaaacgt
gaagaccgtcctacaagcagtaaggcaagcgcaccattcattacgtcgactctgcaacaa
gcggcaagtactcgcttaggttacggtgttaaaaagaccatgatgttggctcagcgtctc
tatgaagcgggttacatcacttatatgcgtactgactcaaccaacttgagtacagaagct
gtggatgcggttcgtgcctatattgattcagaatttggtgcacaatatcttccagctcaa
gcaaaagtatacggtagcaaagaaggtgctcaagaagcgcacgaagccattcgtccttca
agcgtggatgtgaaagctgaagacctagatggtatggaagccgacgcgcacaaactgtac
gcactgatttggaaccagtttgttgcttgtcaaatgacagacgctcaatacgattcaacg
acagtgagcgtaaaagcagcagagtacacgcttaaagcgaagggccgtattctaaagttt
gacggttggactcgtgttcaacgtcctcttggcaaaaacgaagatcagattcttcctgct
gtgaaagtaggagataaacttgcaattgagaaattggacccaagacagcaatttactaag
ccgccagctcgttataccgaagctgcactggttaaagaacttgagaaacgtggcattggt
cgtccatcgacttacgcttcaatcatctcaaccattcaagaccgtgggtatgtgaaagtt
gaccaacgtcgtttttacgcagagaagatgggcgagatcgttactgaccgtctagatgaa
agttttgacgacctgatgaactatgatttcaccgcacgtatggaagagaaactcgaccaa
atcgcggttggtgaaaccagctggaaagaagtgcttgatagcttctttaacgatttcagc
actgatttagaaaaagcagaacaagaagaagaccacggtggtatgaaaccaaatcatatc
gtggaaaccagcattctttgtccgacctgttcacgcccgatgggtattcgtacagcgtct
acaggtgtattccttggttgttctggttatgcattagcaccaaaagaacgttgtaagaca
acgattaacttaggcagcgaagaaggcataatcaatgttcttgaagaagacgtggaaact
gcggcgctacgtgccaagaaacgttgtccaatttgtgaaacagcaatggatgcttaccta
attgacgataagcgtaaacttcatgtttgtggtaacaacccgaactgtgatggttatatt
gttgaagaaggcgagttcaaagttaaaggctatgatggtcctgtggttgagtgtgataag
tgtggctcagacatggtgcttaagaacggtcgctttggtaagtacatgggttgtacaaac
gacgagtgtaaaaacactcgtaagattcttcgtaatggtgaagttgctccaccaaaagaa
gaaccagtacatttccctgaattgccatgtgaaaactcagatgcttacttcgttcttcga
gacggtgcttctggtctgttctttgcggcaagtaacttccctaaatctcgcgaaactcgt
gcgcctctagttgaagaactggctaagtataaagaacgtcttccagagaagttccactat
ttagcaacagcgcctgcgaaagatcctgatggtcgtcttgcggtggttcgttttagccgt
aagggcaaagaacactatgttcgtactgaaaatgatgggaagccatcaggttggaccgct
ctatacatcgatggaaaatgggacatcacagataagcgtaaaaacgcttaa
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