Vibrio ziniensis: G5S32_11540
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Entry
G5S32_11540 CDS
T07449
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vzi
Vibrio ziniensis
Pathway
vzi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
G5S32_11540 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vzi03400
]
G5S32_11540 (recD)
Enzymes [BR:
vzi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
G5S32_11540 (recD)
DNA repair and recombination proteins [BR:
vzi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
G5S32_11540 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
SH3_13
Helicase_RecD
UvrD-helicase
Viral_helicase1
SLFN-g3_helicase
AAA_22
nSTAND3
AAA_16
DEAD
ResIII
Dicer_dsRBD
TrwB_AAD_bind
AAA_28
MukB
NTPase_1
CbiA
SRP54
T2SSE
NPHP3_N
UvrD_C
DUF87
RNA_helicase
Motif
Other DBs
NCBI-ProteinID:
QIH42582
UniProt:
A0A6G7CKF8
LinkDB
All DBs
Position
1:complement(2494903..2497050)
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AA seq
715 aa
AA seq
DB search
MSTQALDVLAHLAKQGSIRQLDYQFARFIASLLSGNELSAEDKNAFLLLVAAVSAELGRG
NICLSLWDSHGSSVDLSAKLGLYGEAALTVNPLWVNANWQQILSNSTLVGLQGEAVPLMF
DGQRLYLHRYWHYEMTLAQRLQSFGSPMILKPTDGQKLKELLDVLFERDYRFLCKALKSS
ETSQVSRQRMVCDFLDVVDDSQLDWIAIDAVLTTVQRMEDLQPLDTLVPASCCLNWQKVA
AAVALTRRFAVISGGPGTGKTTTVTKLLAALIRQSQQQGHTPNIKLVAPTGKAAARLTES
IGKAVESLAVEPELKQAIPTTSSTIHRLLGAIPGSAEFRHHSKNQLHLDVLVVDEASMVD
LSMMVKLVDALPSHARLILLGDKDQLASVEAGAVLGDICSFIENGYSAAQGKLLSELTGF
HSLGNPVSSTNLKTSHSSVADSLCMLQKSYRFDARSGIGQLAKAINSGRAARVDEVWNQD
FSDIHHYPLSSDAYNQMLKSLVDAYSIYLHRSGKRAIEQQEAKSSEPESMATKAKAVLKA
FGQSRLLCAVREGDFGVVGLNHRIERALQARNLIKTQQELWYHGRPVMVTLNDHALGLYN
GDIGICMRDEEDAEQRLKVYFELPDGSVKSVLPSRVPQHETAYAMTIHKSQGSEFEFTAM
ILPPEYSPIVTRELIYTGITRAKERLALYCDIGVLKRGIQFKTERASGLVERLKG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgagcacacaagctttggatgtgttagcgcatttagcgaagcagggcagcattcgtcag
ctcgattatcaatttgctcgttttattgcttctttgttgtctggcaatgagttaagcgca
gaagataaaaacgctttcttattactggtggcggctgtcagtgccgaacttggtagaggc
aatatctgcttatctttgtgggacagtcatggtagcagtgttgatctctctgccaagtta
ggtctttacggtgaagcggcattaacggttaatcctctatgggtaaacgccaattggcag
caaattttatccaactcaacgttggttggtttgcaaggtgaagctgtgccattgatgttt
gatgggcaacgtctgtatttacaccgttactggcattacgagatgacactggcacagcgt
ttacagagctttgggtcacctatgatcttaaagcctactgatggccaaaaactaaaagag
ctgctcgatgtgttatttgaacgcgactaccgctttctttgtaaagccttgaaaagcagt
gagacttctcaggtcagtcgtcagcgaatggtgtgtgatttccttgatgtggtcgacgat
agtcaactggactggattgcaatcgatgctgtgctcactaccgttcagcgaatggaagat
cttcagccgttggatacgctcgttccagcgagttgctgtttgaattggcagaaagtcgct
gcggcggtagctctgactcgacgttttgcggttatttctggtggaccaggaactggcaaa
acgacaactgtaaccaagttgcttgctgctttaattcgtcaatcccagcagcaggggcat
acgccaaatattaagttggttgcgccaacgggtaaggcggctgcacgtttaaccgagtcg
atcggtaaagcggtggaaagtctagccgttgaacctgagctcaagcaggcgataccgacc
acatcaagcacgattcatcgtctgcttggagcaattccgggcagtgcggagtttcgtcat
cacagcaaaaaccagctgcacttagatgtgctggtggttgacgaagcttccatggttgat
ttgtctatgatggtgaaattggttgacgctttgcctagtcatgctcgcttgattttactt
ggtgataaagatcagttggcttctgtggaagcgggcgctgtgcttggcgatatttgctca
tttattgaaaatggatacagcgcggcacaaggtaagctgctctctgaattgactggcttt
cactccttgggcaatccagtttcgtctaccaacctcaagacttcacacagcagcgttgca
gacagcttatgtatgctgcaaaagagctaccgttttgatgcccgttccggtattgggcaa
ttagcaaaagcgattaacagcggcagagccgcgagagttgatgaagtttggaatcaagat
ttctcggatattcaccactacccattaagcagtgacgcttacaatcagatgctcaaatca
ttggtggatgcttattccatctatctgcatcgatcgggtaagcgtgctattgaacaacaa
gaagcgaaaagcagtgagccggaatctatggcaactaaagcaaaagcggtattaaaagcg
ttcggtcaaagccgtttgttatgcgctgtgcgagaaggcgactttggtgtcgttggtcta
aatcatcgaattgagcgtgcgttgcaggcgcgtaatttaattaagacgcagcaggaactg
tggtatcacggtcgtccggttatggtgacactgaacgatcatgctcttggcttgtataac
ggtgatatcggtatttgtatgcgagatgaagaagatgcagaacagagactgaaggtgtat
ttcgaactacccgatggtagcgtaaaatccgtattaccaagccgagtacctcagcatgaa
actgcgtatgcgatgacgattcataaatcacagggcagtgagtttgaattcacagccatg
attttgcctcccgaatacagcccaatcgtcacacgtgaactcatctacacaggtattacc
cgagcgaaagaacgcttggctttgtactgtgatattggtgtgcttaaacgaggaattcag
tttaagaccgaacgagccagtggtttggttgaacgtctaaaagggtag
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integrated database retrieval system
