Vibrio ziniensis: G5S32_13505
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Entry
G5S32_13505 CDS
T07449
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vzi
Vibrio ziniensis
Pathway
vzi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5S32_13505 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vzi03021
]
G5S32_13505 (rpoC)
03400 DNA repair and recombination proteins [BR:
vzi03400
]
G5S32_13505 (rpoC)
Enzymes [BR:
vzi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5S32_13505 (rpoC)
Transcription machinery [BR:
vzi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5S32_13505 (rpoC)
DNA repair and recombination proteins [BR:
vzi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5S32_13505 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QIH42915
UniProt:
A0A6G7CLC4
LinkDB
All DBs
Position
1:complement(2915215..2919417)
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLEKGQMLTEEEYLDRLEEWGDEFSAKM
GAEAIKDLLSSMDLPTEIEQMREELDTTNSETKRKKVTKRLKLVEAFVSSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLAGPEEAEKAYRTK
SAELHARVKVRITETVVDEDGHSTTETKMVDTTVGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISNLLNEAYRKLGLKDTVIFADQIMYAGFAYAALSGVSVGIDDMVVPPAKYTEIAEAEEE
VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSETVINREGKEEKQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVYEHDCGTHEGVDMMPHIEGGDVKVPLTELAL
GRVVAEDILKPGTEEVLVPRNTLLDEKWCQVLNENSVDRIKVRSVVTCDADFGCCALCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNTGTVKL
HNAKFVINKDSKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKADNDAVEAGETVANW
EAHTLPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTDAAARPAAGKDMRPAIKL
VDEKGRDVVIPGTDMPAQYFLPGKAIVNIEDGAEVNVGDTLARIPQKSGGNRDITGGLPR
VADLFEARKPKEPAILAEFTGTVSFGKETKGKRRLVITRDSGDVYEEMIPKHRQLNVFEG
ERIERGDVIADGPESPHDILRLRGIHAVTSYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITFAGDSEFLPGEQVEYSQVKIANRALEAEGKEPARFERELLGITKASLATESFIS
AASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQSKREAQKEGPS
AEQATDNLAALLNAGFSSDE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcacagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtcttttggtgaagttaaaaaa
cctgaaacgattaactatcgtacgttcaaacctgagcgtgatggtctgttttgtgcgcgt
atttttggcccagtaaaagactacgaatgtctttgtggcaaatataagcgtctaaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcatctccagttgctcacatctggttcctaaaatctcta
ccatctcgtatcggtctattaatggatatgccgctacgtgatatcgagcgtgttctttac
ttcgaaatgtacgtagtaacagagccaggcatgactgatcttgaaaaaggtcaaatgctg
actgaggaagagtacctagaccgcctagaagagtggggtgatgaattctccgctaagatg
ggtgcagaagcgatcaaagatctgctttcttctatggatcttcctacagaaatcgaacag
atgcgtgaagagttagatacaactaactctgaaactaagcgtaagaaagtaaccaagcgt
ttgaagctcgttgaagcattcgtaagttcaggtaacaaacctgaatggatgattctgact
gtacttccagtgcttccgccagatctacgtcctctagtaccactagatggcggtcgcttt
gcgacttctgatctgaacgatctataccgtcgtgttattaaccgtaacaaccgtttgaaa
cgtcttctagagcttgctgctccggacatcatcgtacgcaacgaaaaacgtatgctacaa
gagtctgttgatgcgcttctagacaacggtcgtcgcggtcgcgcgatcacaggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaaacgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattt
atctacagcaagctagagactcgtggtcttgcgactacaatcaaagctgctaagaaaatg
gtagagcgcgaagaagctgttgtatgggatatcttggatgaagttatccgtgaacaccca
gtgctacttaaccgtgcaccaacacttcaccgtctaggtatccaggcatttgaacctgta
ctaatcgaaggtaaagcgattcagctacacccactagtgtgtgcggcgtataacgcggac
ttcgatggtgaccaaatggcggtacacgtgcctctaactctagaagcacagctagaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctgtactacatgactcgtgagaagatcaacgcg
aaaggtgaaggcatgtaccttgctggcccagaagaggctgaaaaggcataccgcactaag
agcgctgagctacatgcacgcgttaaagtacgtattacagaaacagttgttgacgaagat
ggtcacagcacaacagaaactaagatggtagatactactgtcggtcgtgcaatgttgtgg
caaatcgtacctgcaggtcttccttacagcatcgttaaccaaaagttaggtaagaagcaa
atctctaacctacttaacgaggcataccgtaagctaggtctgaaagatactgtaatcttc
gctgaccaaatcatgtacgcaggttttgcttacgcagcactttctggtgtctctgttggt
atcgacgatatggttgtaccaccagcgaaatacactgaaatcgcagaagcagaagaagaa
gtacgcgaaattcaagaacagttccaatctggtcttgtaactgcgggcgaacgctacaac
aaagtgatcgatatttgggcatctaccaacgatcgcgtagcgaaagcgatgatggagaac
ctttcttctgaaacggttattaaccgtgaaggtaaggaagagaagcaagagtcattcaac
agcatctacatgatggctgactcaggtgctcgtggttctgcagctcagattcgtcagctt
gcgggtatgcgtggtctgatggctcgtccagatggttcaatcatcgagacgccaatcact
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacagcattgaagacagcgaactctggttacctaacacgtcgtcta
gtagacgttgctcaagacgtagtagtttatgagcacgactgtggcacccacgagggtgta
gacatgatgcctcacatcgagggtggtgacgttaaagttccgctaactgaacttgcgctt
ggtcgtgtggttgctgaagacattctgaaaccaggtacagaagaagttctcgttcctcgt
aacacgcttcttgatgagaaatggtgtcaggttctaaacgaaaactctgttgaccgtatt
aaagtacgttcagtagtaacctgtgacgcagacttcggttgttgtgcactatgttacggt
cgtgacctagctcgtggtcacctagtgaaccaaggtgaagcagtaggcgttatcgctgct
cagtctatcggtgaacctggtacacagctaacgatgcgtacgttccacatcggtggtgcg
gcatctacggcagcagcagagaacagcatccaagctaagaacacaggtactgtgaagcta
cacaatgctaagttcgtaattaacaaagatagcaaactagtgatcacttctcgtgcatct
gagctaactatcattgacgaatttggtcgtaccaaagagaagcacaaacttccttacggt
tcattgctaagcaaagcagataacgacgcagttgaagctggtgaaacagtggcaaactgg
gaagcgcacacgctaccaatcattactgaagtagcaggtcgcatccagttcgtagacatg
atcgatggcgtaacagtttctcgtcaaacagatgacctaactggtctatcttcaagcgaa
gtaactgatgcagctgctcgtccagcagcaggtaaagatatgcgtccagctatcaaactt
gtggatgagaaaggccgcgatgtagtgatccctggtacagatatgccagctcaatacttc
ctgcctggtaaagctatcgtgaacatcgaagatggcgctgaagtgaatgtgggtgatact
cttgctcgtattcctcagaaatctggcggtaaccgagacatcacgggtggtctacctcgc
gtagcagacctattcgaagctcgtaaaccgaaagagcctgcaatccttgctgaattcaca
ggtactgtgtcgttcggtaaagagactaagggtaaacgtcgtctagtaatcactcgcgac
agcggtgatgtttacgaagagatgattcctaagcatcgtcagttgaacgtgtttgaaggt
gagcgtatcgaacgtggtgacgtgatcgcagatggtccagagtctccacatgacatccta
cgtctacgtggtatccacgctgtgacttcttacatcgctaacgaagttcaggaagtttac
cgtctgcaaggcgttaagattaacgataagcacatcgaaaccatcgttcgtcagatgcta
cgtaagtgtacaattactttcgcaggtgactctgagttcctacctggtgagcaagttgaa
tactcacaagttaagattgctaaccgtgctctagaagcagaaggcaaagagcctgcacgt
ttcgaacgtgaacttctaggtatcactaaagcgtctctagcgacagaatcgttcatctct
gcggcatcgttccaagaaacgacgcgcgtactgactgaagctgcggtatctggtaagcgt
gatgacctacgtggtctgaaagagaacgttatcgttggtcgcttgatccctgctggtact
ggttttgcgtaccaccaagatcgtcaatctaagcgtgaagctcagaaagaaggtccttca
gcagagcaagctacagataacctagctgcgctactgaacgcaggtttctcttcagacgag
taa
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integrated database retrieval system
