Vibrio ziniensis: G5S32_13690
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Entry
G5S32_13690 CDS
T07449
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vzi
Vibrio ziniensis
Pathway
vzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5S32_13690 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vzi03019
]
G5S32_13690 (rhlB)
Enzymes [BR:
vzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5S32_13690 (rhlB)
Messenger RNA biogenesis [BR:
vzi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5S32_13690 (rhlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QIH42934
UniProt:
A0A6G7CLH9
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All DBs
Position
1:2952730..2954034
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AA seq
434 aa
AA seq
DB search
MKKTHITEQKFANLDLHPQVIEGLEKKGFEYCTPIQALALPVLLTGQDIAGQAQTGTGKT
IAFLAATFNHLMKTPEVEGRKATQPRAIIMAPTRELAIQIYNDADTLAESTGLKAALAYG
GESYDKQLGKLQEGVDILIGTTGRIIDFYKQRVFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKDRLNMLFSATLSYRVQELAFEHMHNPEHVVVEPEQKTGHRIKEELFYPSN
EHKMALLQTLVEEDWPDRAIIFANTKHRCENIWGALAADGHRVGLLTGDVPQKKRERILE
QFTQGEVDILVATDVAARGLHIPQVTHVFNYDLPDDCEDYVHRIGRTGRAGASGNSISFA
CEEYAINLTAIEEYIAHSIPVSDYDPAALLTNLPKPLTLRSSSPQRRTNTGGSRNNGNRK
PQRRPRAPQKQKDS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacacatatcacagagcaaaaattcgctaacttggatttacatccccaagtc
attgaaggattggaaaaaaaagggttcgaatattgtacccctatccaagcattagcgttg
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggaactggtaaaacc
atcgcgtttcttgctgcgacttttaaccatttgatgaaaacaccggaagttgaaggccgt
aaagctactcagccacgtgcgattattatggctccgacgcgtgaactcgcgattcagatc
tataacgatgctgacacgttagctgaaagcacgggtctaaaagctgcgctggcttatggt
ggtgaaagctacgataaacagcttggcaaacttcaagaaggtgtagatatcctgatcggc
acaactggccgcatcattgatttctacaaacaacgtgttttcaacctgaacaacattcaa
gcggtggttctggatgaagccgaccgtatgtttgatttgggattcattaaggacatccgt
ttcttattccgtcggatgcctgagccaaaagatcgtctgaacatgctgttctcggcaaca
ttgtcataccgagttcaagaattggcattcgaacacatgcacaaccctgagcatgtggtg
gttgagcctgagcaaaaaacaggtcaccgcattaaagaagagctgttctacccttcaaac
gaacacaaaatggcactgctacaaactctggttgaagaagattggccagatcgcgcaatc
atttttgctaataccaaacaccgttgtgaaaacatctggggtgcacttgctgctgatggt
caccgcgtaggtttgctaacaggtgatgttccgcagaaaaaacgtgagcgtattttggaa
cagtttactcaaggtgaagtcgatattcttgttgctacagacgtggcagctcgtggtctg
catatcccgcaagtaacgcacgtatttaactacgatctgcctgatgactgtgaagattac
gttcatcgtatcggtcgtactggtcgtgccggcgcaagcggtaactcgatttcgtttgct
tgtgaagagtacgcgatcaacttaactgcaattgaagaatacattgcacattcgatcccg
gtgtccgattacgacccagcagcgctactgacgaatttgccgaaaccgttaacacttcgc
tcatcgtcaccacagcgccgtaccaacacaggtggttctcgcaacaacggaaatcgtaaa
ccacaaagacgcccacgcgcacctcaaaagcaaaaggattcgtaa
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