Vibrio ziniensis: G5S32_15975
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Entry
G5S32_15975 CDS
T07449
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vzi
Vibrio ziniensis
Pathway
vzi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5S32_15975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vzi03019
]
G5S32_15975
03009 Ribosome biogenesis [BR:
vzi03009
]
G5S32_15975
Enzymes [BR:
vzi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G5S32_15975
Messenger RNA biogenesis [BR:
vzi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G5S32_15975
Ribosome biogenesis [BR:
vzi03009
]
Prokaryotic type
rRNA helicases
G5S32_15975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIH43494
UniProt:
A0A6G7CN46
LinkDB
All DBs
Position
2:complement(200976..202925)
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AA seq
649 aa
AA seq
DB search
MSDTVIQFSDLALNSAVLSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF
SLPLLNKIDLSQHKPQAIIMAPTRELAIQVAAEIKNLGQNISGLKVLEIYGGASIVDQMR
SLRSGAHIVVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPMVKTIVDRFLRNPARVDVAGSNQTVEKVEQQFWVVKGVEKDEAMTRLL
ETEETDASIVFVRTRQDTERLADWLSSRGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI
ERVTRSSMEEIQLPHRDQVAEARLSLLAAELAAEKENNTVLDKFAELVEKLQASLEMDTE
TLCAILLKRQQGKRPLFYTGEDPMIAAVERDKLRRRERRDDRGERSERSEGGRREFGGRD
NADWETYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMTAEVT
GKLRKLRIRQKEVGAVVCDFDDFRESRGGRREGGRRDGGNRDGGFRGNREGGREGGNRRE
GGFRGNREGGNREGGHREGGERRFDRNRGGDNRGNYRGERGHNRRSQEA
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatactgtaattcaattcagtgacttagcacttaacagtgctgttctttcagcc
cttgattcaatgggcttcgtgtctccaactcctatccaagctgctgctattcctctttta
ttagaaggtcgcgacgcattaggtaaagcacaaacaggtacaggtaaaacagctgcattc
tctttgccgcttttaaacaagatcgatctatctcagcacaaacctcaagcaatcatcatg
gctccaactcgtgagctagcgattcaggtagctgctgagatcaaaaacttaggtcaaaac
atttctggtcttaaagttctagaaatctacggtggtgcatctatcgttgatcaaatgcgt
tctctacgttcaggtgctcacattgttgttggtactcctggtcgtgtgaaagatttgatc
actcgtgagcgtctacacctggacgagtgtcatacattcgttctggatgaagctgacgaa
atgttgaagatgggcttcgttgacgacgttacttggatcatggagcaagctcctgagtca
gcgcaacgcgtactgttctcggcaacaatgccaccaatggtaaaaacgattgttgaccgc
ttcctacgtaaccctgcacgtgtagacgttgccggttcaaaccaaactgttgagaaagtt
gaacaacaattctgggttgtgaaaggcgtagagaaagacgaagcaatgactcgtcttcta
gaaactgaagaaactgatgcatcaatcgtgttcgttcgtactcgtcaagatactgagcgt
ctagctgactggttaagctctcgtggctttaaagctgctgcactacacggtgatatccca
cagtctctacgtgagcgtacagtagaccatatcaaacaaggtgtcattgatatccttgtt
gcgactgacgttgttgctcgtggtcttgatgtgccacgaatcactcacgtatttaactac
gatattccattcgatgttgagtcgtacatccaccgtatcggtcgtacaggtcgtgctggc
cgtaaaggtaaagcgatcctgttagtacgtactaaccaacttcgcatgcttcgcactatt
gagcgtgttactcgttcatcaatggaagaaattcaacttccacaccgtgatcaagtagct
gaagctcgtctttctctacttgctgctgagctagcggctgagaaagaaaacaacacagtt
cttgataagtttgcagaactagtagagaagctacaagcgtctctagaaatggacactgaa
acactttgtgcaatcttgttgaaacgtcaacaaggtaagcgtccactattctacactggt
gaagatccaatgatcgcagcagtagagcgtgataagctacgccgtcgcgagcgtcgtgat
gatcgtggtgagcgcagcgagcgtagtgaaggtggtcgtcgtgagttcggtggtcgtgac
aacgctgattgggaaacttaccaacttcaagttggccgtgaccaaggcgtacaagttaaa
gacatcgttggcgcacttgcaaatgaactaggcctaacgaaaggttctatcggtgcgatc
aaactggctcaaggtcatacgtttgttcagcttccaaagacaatgactgcagaagtgaca
ggcaaactacgtaaactacgtatccgtcaaaaagaagtgggtgcagtagtctgtgatttt
gatgatttccgcgagtctcgtggtggtcgtcgtgaaggtggacgtcgtgacggtggtaac
cgtgatggtggcttccgtggtaatcgtgaaggtggtcgtgaaggcggtaaccgtcgcgaa
ggtggcttccgtggtaaccgcgaaggcggtaatcgtgaaggtggtcatcgcgaaggtggt
gagcgtcgtttcgaccgtaaccgtggtggtgacaaccgtggtaactaccgtggtgaacgt
ggtcacaaccgtcgcagtcaagaagcttaa
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