Vibrio ziniensis: G5S32_15980
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Entry
G5S32_15980 CDS
T07449
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vzi
Vibrio ziniensis
Brite
KEGG Orthology (KO) [BR:
vzi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vzi03016
]
G5S32_15980 (rnb)
Enzymes [BR:
vzi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
G5S32_15980 (rnb)
Transfer RNA biogenesis [BR:
vzi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
G5S32_15980 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QIH43495
UniProt:
A0A6G7CN21
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All DBs
Position
2:203303..205351
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AA seq
682 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGVIKATDKGFGFLEVDSKTSFFIPPPYMKKCIHGDKV
VAIIRTEKEREVAEPQELLEQSLTRFIGRVKLFKGKLNVAPDHPQLKKMPLKAKVKKGLN
QEEFQEGDWVVAHLVRHPLKGDDNFFVEISEKITDSEDKIAPWWVTLAENDLPNSEPAGI
ENWVLKDDAELERSDLTHVPFVTIDGASTKDMDDALYAKKLENGSFELTIAIADPTAYIT
PDDEMDKVARQRGFTIYLPGRNIPMLPRDLADDLCSLIENQVRPALCCTVTVGADGVIAD
DIRFFAANIQSHARLVYDHVSDWLESGSSTEWQPTETIAEVVRTLYEFSQARANWRENNA
VVFPDRPDYRFELSEDNDVIAIHADMRRTANRLVEESMITANICAGKVLQSTFNAGVFNT
HAGFKADKMADVVELMTSNGAQCDAESLATLEGFASLRRWLCGQDTSYLDNRIRKCQSYS
EIGNQPLPHYAMGLEVYATWTSPIRKYGDMINHRMLKAHILNKEPVQQPDETIGEELALH
RKHHKIAERNVADWLYARTLAEEPTKQTLFNAEIFDINRAGVRVRLLENGAAAFIPASLI
LANKERLDCNGEQGIITIDKEAVYRLGDTFEVVLTDVSQENRSIVAKPTQVFADEPQTDA
EAQVQSTENAQQAEMSREEKAE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagacaacccgttacttgcccaactaaagcaacaaattcaagaaaacctgcca
aaaaaagaaggcgtcattaaagctacagataaaggctttggtttcttagaagtcgatagt
aaaaccagtttcttcattccgcctccgtacatgaaaaagtgtattcacggagacaaagtg
gttgccattatccgtacagagaaagaacgtgaagtcgcagagccacaagagcttcttgag
caatcactgactcgctttattggccgcgtaaaattattcaaaggcaaacttaacgttgcg
cctgatcacccacaacttaaaaagatgcctttaaaggcaaaagttaagaaaggtttgaat
caggaagagttccaagaaggtgactgggttgttgcacatcttgttcgtcaccctctaaaa
ggcgatgataatttcttcgtagaaatttctgaaaaaatcaccgattctgaagacaagatc
gcaccatggtgggtaacgttggcagaaaatgatctgccaaacagtgaaccagcgggaatc
gaaaattgggtacttaaagatgacgctgaactggagcgctcagatctaactcacgtacct
tttgttacgattgatggcgcatccactaaagacatggacgatgctctctacgcgaaaaaa
cttgagaacggtagctttgagctgacgatcgcgattgccgaccctactgcatatatcact
ccggatgatgagatggataaagtagcccgtcaacgcggttttaccatttatctgccaggt
cgtaacataccgatgttgccacgagatttggctgatgacttatgctcattgatcgaaaac
caagtccgtccagcgctttgttgtacggtaactgttggtgcggacggtgttatcgcagac
gacattcgtttcttcgctgcaaatattcaatctcacgctcgccttgtttacgaccacgtt
tctgattggttggaaagcggttcgtctacagaatggcaaccaacagaaacgattgcagaa
gtcgtacgtactttgtatgagttttctcaagcacgtgcaaactggcgcgaaaacaatgct
gtggttttccctgaccgccctgattaccgatttgaactgagcgaagataacgacgttatc
gcgattcacgcagatatgcgtcgcactgcaaaccgtttggttgaagaatcaatgatcaca
gccaacatctgtgcaggcaaagtgctgcaatcaacgttcaacgctggggtattcaataca
cacgctggcttcaaagctgacaagatggcagatgtagtagagttgatgacatcaaatggc
gctcagtgtgatgctgaaagtctggcaacattagaaggttttgcttcactacgtcgttgg
ttgtgtggtcaagatacgtcgtacttggataaccgtattcgtaaatgtcaaagttacagt
gaaattggtaaccaaccactccctcattatgcaatgggcttagaggtttacgcgacttgg
acttctccaattcgtaaatacggtgacatgattaaccaccgcatgcttaaagcgcatatc
ttgaataaagagcctgtgcagcagccagatgaaaccataggtgaagagctggcactgcat
cgcaagcatcacaagattgcagagcgcaacgtcgctgactggttgtacgcacgtactttg
gcagaagaacctacaaaacaaacgctatttaatgcagagatctttgacattaaccgcgca
ggagttcgtgtacgtttacttgaaaatggtgcagcggcatttatccctgcatcattgatc
ctagccaataaagagcgcttagactgtaacggtgaacaaggcatcatcactattgataaa
gaagcggtataccgcctaggtgacacatttgaagtggtgttgactgatgttagccaagaa
aaccgtagtatcgtagcgaaaccaactcaagtgttcgcagacgaacctcagacggacgct
gaagcacaagtacaatctacagaaaatgcacagcaggctgaaatgagtcgagaagagaaa
gcagaataa
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