Wolffia australiana: 144712708
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Entry
144712708 CDS
T11932
Symbol
LOC144712708
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
wau
Wolffia australiana
Pathway
wau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
wau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
144712708 (LOC144712708)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
wau03041
]
144712708 (LOC144712708)
Enzymes [BR:
wau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
144712708 (LOC144712708)
Spliceosome [BR:
wau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
144712708 (LOC144712708)
Complex B
144712708 (LOC144712708)
Complex C
U2 SnRNP specific factors
144712708 (LOC144712708)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Cas3-like_C_2
DUF3006
Motif
Other DBs
NCBI-GeneID:
144712708
NCBI-ProteinID:
XP_078443114
LinkDB
All DBs
Position
1:complement(26185522..26189927)
Genome browser
AA seq
743 aa
AA seq
DB search
MSKRRKFGFEGFGITRPASYSFERSQPPPRLYVPPSSRAGHDNYEDNDVEGIDYDSDAGE
DPQPKVADDGEIDPLDAFMQGIQEEVKKAPPPDQPKAERFNDDDEDDDPMDSFLRAKKDV
GLALASEALHAGYDSDEEVYAAAKAVDAGMIDYDSDDNPVVVDKKKIEPIPALDHSCIDY
EPFNKDFYDEKPSISGMTEQEVGDYRRSLAIRVTGFDAPKPIKEFGDCGFSSTLMNSISK
QGYQKPTTIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIAHIMDQPELNKEEGPIGV
ICAPTRELAHQIYLEAKKFSKAHGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDL
LKMKALTMVRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPKRVERLAR
EILSDPIRVTVGEVGQANEDITQVVKVLPSEAEKLPWLLEKLPEMIDEGDVLVFASKKAT
VDELESQLSQKGFKVGALHGDKDQASRMEILQTFKAGIFHVLIATDVAARGLDIKSLKSV
VNFDIARDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELANSLVAAGQNVPPELM
ELAMKDGKFKARRDGRKGGSGGKKGAGRGRGVRGVDFGLGLGFSPESKAPSGQSGSMRSA
TVNSLRTGMMAQFKNSFVSSSSNLEIQTQKPATLSGFVSGGSIGGGSNRQLPVNSSSSGG
SQREPDSSREKPKERRRPSGWDR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggagaaaattcggattcgagggcttcggcatcacccgccccgcctcctac
tccttcgagcgatcccagcctccccctcgcctctacgttcccccttcatcccgcgccggc
cacgacaactacgaagacaacgacgtcgaaggcatcgattacgactccgacgccggcgaa
gatccccaaccgaaggtcgccgacgatggcgagatcgatccccttgacgcgttcatgcag
gggatccaggaggaggtgaagaaggccccccctccggatcagcccaaggcggagagattc
aacgatgatgatgaagatgatgatccgatggatagtttcttgcgggcgaagaaggatgtc
ggtctggccttggcctcggaagctcttcacgcggggtatgattctgatgaagaggtttat
gccgcggcgaaggctgtcgatgcggggatgatcgactatgattctgatgataatccggtg
gtcgtggataagaagaagattgagccgattcctgcgcttgatcatagctgcatcgattat
gagcccttcaataaggatttctacgacgaaaaaccttccatatcaggaatgacagagcag
gaagtcggcgattaccgaagaagcctcgcaatcagggttaccggattcgatgcgccgaag
ccgataaaagagtttggagactgcggattctcgtctacattgatgaactctatatccaag
caaggctaccagaagcccacgacgatccagtgccaagcattacccatcatactctccgga
agagacataattggtattgcgaagacgggttccggcaaaactgctgccttcgtgctaccc
atgattgctcatatcatggatcagcccgagcttaacaaggaagaaggtccaattggagtt
atatgtgcacccaccagagaattggcccatcagatctatctagaagccaagaagttctca
aaggcccatggaatccgggtctccgccgtctacggaggcatgtccaagctagaacagttc
aaagaacttaaagccgggtgcgagatcgtggttgcaactccggggagattaattgattta
ctgaaaatgaaggccttaaccatggtcagggcgacttatctcgtccttgacgaagcagac
cgaatgtttgacctcgggttcgagcctcagataaggtccattgttgggcagatccggcca
gaccgacagactctgctgttttcagcgacgatgccgaagagggtcgagcggctggctcgt
gagatcttatcagatccgatccgggtcacagtcggggaagtgggccaggccaacgaagac
ataacccaggtggtcaaagtccttccttctgaagcggagaagctcccatggctgctggag
aagcttccggagatgatcgacgagggggacgtactcgtgtttgcgtcgaagaaggcgacg
gtggacgagctcgagtctcagttgagtcaaaaggggtttaaggtgggtgctctgcatggg
gataaagaccaggcctcacgaatggagattttgcagacattcaaggctggaattttccat
gttctgatagctacggatgtcgcggctcgcgggctggacatcaagtcactgaaatccgtg
gtgaactttgatattgccagagatatggacatgcatgttcatcggattggaagaacgggg
cgcgcaggagataaggacggggtcgcttatacgctaattacccagaaagaagctcgattt
gccggggaattagccaacagcttggttgctgctggccagaatgtgccgccggagttgatg
gaacttgcgatgaaggatgggaaatttaaggccaggagagatgggcgtaaagggggctca
ggggggaaaaagggggcaggaagaggaagaggagtcagaggggttgactttgggctcggg
ctggggttcagtccagagtcaaaggcgccttcgggccaatctgggtcaatgagatcggcg
acggtcaactccctgagaacagggatgatggcccagtttaagaacagcttcgtgtcgtca
tcgtccaatctcgagatccagacgcagaaacccgcgacgctttcggggtttgtgtccggc
ggctctatcggcggtgggagcaaccggcaactcccggttaactcgagttctagcggcgga
agtcagagggagccagacagctccagggagaagcccaaggaaaggcggaggccttccggc
tgggaccgttga
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