Wielerella bovis: MIS45_07815
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Entry
MIS45_07815 CDS
T08126
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wbo
Wielerella bovis
Pathway
wbo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MIS45_07815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wbo03400
]
MIS45_07815 (mfd)
Enzymes [BR:
wbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MIS45_07815 (mfd)
DNA repair and recombination proteins [BR:
wbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MIS45_07815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
AAA_30
UB2H
Helicase_C_2
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ULJ68694
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All DBs
Position
1599193..1602759
Genome browser
AA seq
1188 aa
AA seq
DB search
MNYPIPAVSQKSYWTELSNGSLIYLLTQNLPPNSTKLILTADSETAHRLHQAWQFFRPQD
NALFFPDWETLPYEHFSPHKDLVSERLSVLWQLKNGGVNALFVPVATAMQKLAPVSFLLA
RTFWLKVEQTLNIDFLKKNLVEAGYHSVDNVLAAGEFAVRGGIVDVFPMGAELPYRLDLF
DNEIEQIKTFDPETQRTLQNINEIRLLPAHEFPTDTDTQKIFRSRFREEIDSDPSAAAVY
KAVGNGQFGAGVEYYLPLFFEQDCANLFDYLGENAIVVCTDNVHAHANRFWADVKSRHQL
AQGDATYPPLTPPHLFLSPDQFSGCLKPYPQIWTQCDERHDLPNLAVNRQAEQPLAALAD
FQAAFDGKILICAESLGRRETMSAFFKQNGLETHIVENWAEFVAGSLKNPLAICVAPLVQ
GFQINSNLVPSPAPNGGGLGWGQIGETTPTPALPRQSGEGADLWQPENALAQSRSQNLKN
NVSGSLKIAVITETELYQYLARPKSRRLKHAKISDTALRDLAEINLGDPVVHQEHGIARY
QGLVNMNFGDGDTEMMLLEYANEAQLYVPVSQLHLISRYSGSAAENVSLHKLGTSAWGKA
KRKAAEQVRDTAAELLNLYAQRAAQTGFKFEINELDYQAFADGFGYEETEDQAAAIAAVL
KDLTQSKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAKNFADRF
ADFPVKTAALSRFNSTKETKATLAGMADGTVDIVIGTHKLVQDDISFKNLGLVIIDEEHR
FGVRQKEQLKRLRANVDMLTLTATPIPRTLSMALEGLRDFSLMTTAPSRRLAVKTFVKPF
GDGSVREAVLRELKRGGQVFFLHNEVDTIENMRDKLAELLPEARIGVAHGQLRERELEQV
MREFLQQKFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAYAY
LFTPEFVSKDAQKRLDAIAAADELGAGFALAMQDLEIRGAGEILGEGQSGEMAQVGLTLY
TEMLKQAVRDLKKGRMPDLDSPLGVSTEIKLHAPALLPESYCPDIHERLVLYKRLATCEN
INQINEIYEELIDRFGLPETPVNTLVESHRLRVLARDLGIETVDATADALTLGFGKQMVL
DPMKIIAIMQREKGWRMAGGDRLRVEIKSADVVARIENVRKVLKLLAE
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaactaccctattccagccgtatcacaaaaatcatactggacagaattatccaatggc
tcacttatctatttactcacacaaaatttgccacccaattccaccaagctgattttaacc
gccgacagcgaaaccgcccaccgtctccaccaagcgtggcaatttttccgaccgcaagac
aacgccctgtttttccccgactgggaaactttgccctacgaacatttttcgccccacaaa
gaccttgtttctgaacggctttccgttttgtggcaactgaaaaatggtggcgtaaacgcg
ctgtttgtgccagtcgccacagccatgcaaaagctcgcgcccgtgtcgtttttgttggcg
cggacgttttggctgaaagtcgagcaaacgcttaacattgattttttaaagaaaaattta
gtggaagcaggttatcacagcgtggacaatgttttggcggctggcgaatttgccgtgcgc
ggtgggattgtggacgtgttccccatgggcgcggaattgccctatcgccttgatttgttt
gacaatgaaattgaacaaatcaaaacctttgaccccgaaacgcaaagaaccttacaaaac
atcaacgaaatcagattattacccgcccacgaattccccacagatacagacacacaaaaa
atcttccgcagccgtttccgcgaagaaatagacagcgacccgtccgccgcagccgtgtac
aaagcggtcggcaatgggcaatttggtgcaggcgtggaatattatctgcccttgtttttt
gaacaagattgcgccaatctgtttgattatttaggggaaaatgcgattgtggtttgcacg
gacaatgtccacgcccatgccaatcgtttttgggcggacgtgaaatcgcgccaccaactc
gcgcagggcgatgcgacttatccgccgctcacgccgccacatttgtttttgtcgcccgac
caattttcaggctgcctgaaaccctatccgcaaatttggacacaatgtgatgaaagacat
gatttacctaatctcgcggtaaatcgtcaagcggaacagcctttggcggcattggcggat
tttcaggctgcttttgacggcaaaattttgatttgcgccgaaagtttggggaggcgcgaa
accatgtccgcctttttcaaacaaaatggtttggaaacgcatattgtggaaaattgggcg
gaatttgttgcaggcagcctgaaaaatccgttggcaatttgcgttgcgcctttggtgcag
ggttttcaaataaacagcaatcttgtcccctcccccgccccaaacgggggagggttaggg
tgggggcaaatcggcgaaaccacccccaccccagccctcccccgccagtcgggggagggg
gcagatttgtggcagcctgaaaatgcgttggcacaatcccgttcacaaaatttgaaaaac
aacgtttcaggcagcctgaaaattgctgtcatcaccgaaaccgaactttatcaatacctt
gctcgccccaaatcccgccgcctgaaacacgccaaaatttccgacaccgccctgcgcgat
ttggctgaaatcaatttgggcgaccccgttgtccaccaagaacacggcattgcgcgttat
caaggcttggtcaatatgaattttggcgatggcgacacggaaatgatgttgctggaatac
gccaacgaagcacaactgtatgtgcctgtttctcaattacatttaatcagccgctattca
ggcagcgcggcagaaaacgtgtctttgcacaaactcggcacaagcgcgtggggcaaagcc
aaacgcaaagccgccgaacaagtccgcgacaccgccgccgaattgctcaatttgtacgcc
caacgtgccgcgcaaacgggtttcaaatttgaaatcaatgaattggattaccaagcattt
gcagatggatttggctacgaagaaaccgaagaccaagccgcagccattgctgccgtattg
aaagacttgacccaatccaaaccaatggacaggctggtgtgtggcgatgtcggttttggc
aaaacggaagtggcgttacgcgccgcgtttgtcgcggtgatgggcggcaaacaggttgcc
gtgttagccccgaccacgcttttagtagaacaacacgccaagaattttgccgaccgtttt
gccgattttcccgtgaaaacggcagcgttgtcgcgttttaacagcaccaaagaaaccaaa
gccacactcgctggcatggcggacggcacggtggacatcgtcatcggcacgcacaaattg
gtgcaagacgatatttcgtttaaaaacttgggcttggtcatcattgacgaagaacaccgt
ttcggtgtgcgccaaaaagagcagttgaaacgcctgcgcgccaatgtggacatgctgacg
ctgaccgccacgcccattccgcgcacattgagcatggcgttggaaggtttgcgcgatttt
tcgctgatgacgaccgcgcccagccgtcgacttgccgtgaaaacttttgtgaaaccgttt
ggcgatggcagtgtgcgcgaagccgtgttgcgcgaattgaaacgcggtggacaagttttt
ttcctgcataatgaagtagatacgattgaaaatatgcgcgacaagctggctgaacttttg
cccgaagcgcgaattggcgtggcgcacggacagttgcgtgaacgcgagttggaacaggtc
atgcgcgaatttttgcaacagaaattcaatgtcttactctgttccaccattattgagacg
ggcattgacattccgaacgccaacacgattatcatcaatcgtgccgacaaatttggcata
gcccagttacaccagttgcgtgggcgcgtggggcgcagtcatcatcaggcgtatgcttat
ctttttacacccgaatttgtcagcaaagacgcgcaaaaacggctggacgcgattgcggcg
gcggacgaattgggcgcaggtttcgcgcttgccatgcaggatttggaaattcgtggcgcg
ggcgaaattttgggcgaagggcaatcgggcgaaatggcgcaagtcggtttgactttgtac
acggaaatgttgaaacaagccgtgcgcgatttgaaaaaggggcgcatgcctgatttggac
tcgcctttgggcgtgagtaccgagattaaattgcacgcgccagctttgctgcctgaaagt
tattgccctgatattcatgaacgcttggtgttgtacaaacgtttggcgacttgcgaaaac
atcaatcaaatcaatgaaatttacgaagaattgattgaccgttttgggctgcctgaaacg
cctgtgaatacgctggtggaaagtcatcgtttgcgcgtattggcgcgggatttggggatt
gagacggtggacgcgactgcggacgcgctgacattgggtttcggcaaacaaatggtgctt
gacccgatgaaaatcatcgccatcatgcaacgcgaaaaaggttggcgcatggcaggtggc
gatagattgcgcgtggaaatcaaaagcgcagatgtggtggcacggattgagaatgtgcgg
aaggtgttgaagttgttggcggaataa
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