Candidatus Westeberhardia cardiocondylae: WEOB_078
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Entry
WEOB_078 CDS
T09022
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
wca
Candidatus Westeberhardia cardiocondylae
Brite
KEGG Orthology (KO) [BR:
wca00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
WEOB_078 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wca03021
]
WEOB_078 (rpoD)
Transcription machinery [BR:
wca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
WEOB_078 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF643
Motif
Other DBs
NCBI-ProteinID:
CEN32037
UniProt:
A0A0H5BWG5
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All DBs
Position
I:93954..95834
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AA seq
626 aa
AA seq
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MEQNPQSQLKLLITRGKEQGYLTFSEINDYLPNDIVNSDQIEGIIQMINDMGIQVTEDAP
NSEDLLLISDASNADEESLEVVTAQVLSSVDSEINYTTDPVRMYMREMGSVELLTREGEV
DIAKRIEDGINQVQRSLSEFPLVILYLLGQYKHVVSNKIRISDLVLGFSDTNFNENVMSN
SNSISTVSSTSHIKSKISLDNVCKNECDEENSNNRDVNEEDNNIVDLELAKNKFMELQKQ
YYVTHKIIQMYGRKHIKSSREILNLSDIFKQFRLAPKQFDYLVNIVRTIVCRVRTQERFI
MKLCVDVSKMPKKKFIFLFSGNESSEFWFKKALLEKEPWAENLQNVGEDVYCSLNILHEI
EKETGLSIEQIKDINRRMLIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQE
GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIS
RKMLQEIGREPTPEELSERMLISEDKIRKILKISKEPISMETPIGDDEDLHLGDFIEDVS
LELPLDSATAESLRSATHSILSGLTAREEKVLRMRFGIDMNTDHTLEEVGKQFDVTRERI
RQIEAKALRKLRHPSRAEILRSFLDD
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggagcagaatccacaatcacaattaaaattgcttattacccgcgggaaagaacagggg
tatttaactttttctgagattaatgattatctaccaaatgatattgtgaattccgatcaa
attgaggggattattcaaatgataaatgatatgggaattcaagttacagaagatgcacct
aactctgaagatcttttattaatttctgatgcttcaaatgcagatgaagaatctttagaa
gttgttactgctcaagtcttgtcaagtgttgattctgaaattaattatacaactgatccg
gttcgtatgtatatgcgtgaaatgggttctgtggaattattaactagagaaggagaagta
gatattgcaaaaagaatagaggatggaattaatcaagtgcagcgttctctatctgaattt
cccttagtgattttatacttattaggacagtataagcatgttgtttctaataaaattcgt
atatcagatttagttttaggtttttctgatactaattttaatgagaatgttatgagtaat
agtaattcaatttctacggtatctagcacgtcacatattaaatctaagatttctttagat
aatgtttgtaaaaatgaatgtgatgaagaaaatagtaataatcgtgatgtaaatgaggag
gataataatattgttgatttagaattagcaaaaaataaatttatggaattacaaaaacaa
tattatgttactcataaaattattcagatgtatggtagaaaacatattaaatcttctaga
gaaattttgaatctatctgatatttttaaacaatttcgtttagctccaaaacagtttgat
tatttggtaaatatcgttcgaactatagtatgccgtgttagaacacaggaacgctttatt
atgaaattatgtgttgatgttagtaaaatgccgaagaaaaaatttatttttttattttct
ggaaatgaatctagtgaattttggtttaaaaaagcgttattagaaaaggaaccttgggct
gaaaatttgcaaaatgtgggagaagatgtatattgtagtttgaatatattacatgaaatt
gaaaaagaaacaggtttgagtattgagcaaatcaaagatattaatcgtcgcatgttgatt
ggtgaagcaaaagcaaggcgcgctaagaaggaaatggtggaagcgaatttacgtttggtt
atttctattgctaaaaaatatacaaatcgtggtttacaatttttagatttgattcaagaa
ggaaatattggtttgatgaaagcagtagataaatttgaatatcgtagagggtataaattt
tctacttatgcaacatggtggattcgccaagctattacccgatctatcgcagatcaagca
cgtactattcggatccctgttcatatgattgaaactataaataaattaaatcgtatttca
agaaaaatgttgcaggaaattggtcgtgaaccaaccccagaagaattgtcagaacgtatg
ttgatatcagaagataaaattagaaaaatactaaaaatttctaaggaacctatatctatg
gaaacccctattggggatgatgaagatttacatttaggggattttattgaagatgtttct
ttggagttgcctttagattctgcgactgcagagagtttacgttcagcaacacattctatt
ttgtcaggtcttaccgctagagaagaaaaagtattgcgaatgcgttttggtatagacatg
aatactgatcatacgttggaagaagtaggaaaacaatttgatgtaactcgcgaaaggatt
aggcaaattgaagctaaggcactgcgtaaattgcgtcaccctagtcgtgctgaaatatta
cgtagttttttagatgattaa
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