KEGG   Candidatus Westeberhardia cardiocondylae: WEOB_223
Entry
WEOB_223          CDS       T09022                                 
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
wca  Candidatus Westeberhardia cardiocondylae
Pathway
wca03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:wca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    WEOB_223 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:wca03400]
    WEOB_223 (mfd)
Enzymes [BR:wca01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     WEOB_223 (mfd)
DNA repair and recombination proteins [BR:wca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      WEOB_223 (mfd)
SSDB
Motif
Pfam: DEAD TRCF Helicase_C CarD_TRCF_RID ResIII SNF2-rel_dom Cas3-like_C_2 RecG_dom3_C
Other DBs
NCBI-ProteinID: CEN32171
UniProt: A0A0H5C5E4
LinkDB
Position
I:269521..271620
AA seq 699 aa
MKQNIKNKYTNTNLNLKNVSLYELYIGQPIVHVKYGVGRYDGMKTLEINGIKMEYLIIRY
FNNDKLYVPISSLYLIDRYIGSTKEQIPLHKLGNNIWIRLKKKVLKRIQDISIKLLNFYA
KRIAKKGYSFQYNKKEYKSFCEKFPYEETPDQKNAMDIVLYDMLQPFSMDRLICGDVGFG
KTEIAMRAAFIAIQNNKQVAVLVPTTLLAQQHFYNFKNRFSNWPICVEMISRFCNKKEQN
RILKNTHIGEIDILIGTHKLLQRDVKWKRLGLLIIDEEQRFGVRHKEQIRSIRENIDMLT
LTATPIPRTLNMAIHGIRDLSIISTPPAKRKSIKTFVCEYDKNIICEAISREIFRNGQVY
YLCNDINFIEKTAFSLKKMLPNISVSIAHGKMKERDLKQVMDDFYHKLFNVLVCTTIIET
GIDIANVNTIIIERADRFGLGQLYQLRGRVGRSCNQAYSYLLIPSLKELSKNASKRLEAI
VSLETLGSGFSLATHDLEIRGPGALFGEDQSGDIQNIGFSLYMNLLRDTIDTLKNGKKLS
LNDILNQQDIEIELGVPAFFPEDYISNVNIRLSLYKKISDIKKCSQIEKLKKMIINCFGP
LPKSAEYLFSLVYIREKAKFLKIKKIKSTNRDGLIEFYSIGHINFLYLIKLIKKYFNRYY
ISNTSMELKFIHNYIKFDERLHFINILLDKVKKNISFIN
NT seq 2100 nt   +upstreamnt  +downstreamnt
atgaaacagaacataaaaaataaatatactaatacaaatttaaatttaaaaaatgtttcg
ttgtatgaattatatattgggcaacccatagtacatgttaaatatggggttggaagatac
gatggaatgaaaacattagaaattaatggaataaaaatggagtatttaattattcgttat
ttcaacaatgacaaattatatgtaccaatatcttcattgtatttaatagaccggtatatt
ggatctacaaaagaacaaattccgttacataaattgggaaataacatttggatacgttta
aaaaaaaaagttttgaaaagaattcaagatatttctattaaattattaaatttttacgca
aaacgtatagcaaaaaaaggttattcttttcaatataataaaaaagaatataaatctttt
tgtgaaaaatttccttacgaagaaactccagatcaaaaaaacgctatggatattgtgtta
tatgatatgttacaaccattttctatggatcgtttgatttgtggggatgtgggttttgga
aaaacagagattgctatgcgtgcagcttttattgctatacaaaataataaacaagttgct
gtattagttccaacaactttattagcacaacaacatttttataattttaaaaatagattt
tctaattggccaatatgtgtagaaatgatttctagattttgtaacaaaaaagaacaaaat
aggattttaaaaaatactcatataggtgaaatagatattttaattggaacacataaatta
ttacaacgtgatgttaaatggaaaagattgggattattaattattgatgaagaacaaagg
tttggtgttcgacataaagaacaaataaggtctattcgcgaaaatatagatatgttaact
ttaactgctacacctattcccagaacattaaatatggcaattcatggtatacgcgattta
tctattatttctactcctcccgctaaaagaaaatcaataaaaacttttgtatgtgaatat
gataaaaatataatttgtgaagccatatctagagaaatttttcgaaacgggcaagtttat
tatctttgtaatgatataaattttattgaaaaaacagctttttctttaaagaaaatgttg
ccaaatatttctgtttctattgctcatggaaaaatgaaagaacgcgatttaaaacaagtt
atggatgatttttatcataagttatttaatgtattagtatgtacaacaattatcgaaact
ggaatagatattgctaatgttaataccattattattgaacgagctgatcgatttggatta
ggacagttgtatcaactacgaggccgtgtaggacgatcatgtaatcaagcttattcttat
ttgctaataccatctttaaaagaacttagtaaaaatgcttctaagagattggaagctatt
gtttctttagagactttaggatctggattttcattggcaacacatgatttagaaattagg
ggtccaggtgctttgtttggagaagaccaaagcggagatatacaaaatattggtttttct
ttatatatgaatcttttaagagatacaattgatacattgaaaaatggaaaaaaattatct
ttaaatgatattttaaatcaacaagatattgaaatagaactaggtgttccagcattcttt
ccagaagattatatatcaaatgtaaatatacgtttatcattatataaaaaaatttctgat
attaaaaaatgcagtcaaatagaaaaattaaaaaaaatgattattaattgttttgggcct
cttccaaaatcagcggaatatcttttttctttagtttatattagagaaaaagcaaaattt
ttaaaaattaaaaaaataaaaagcacaaacagagatggattaattgaattttattcaatt
ggtcatattaattttctttatttaatcaaattaataaaaaaatattttaatagatattat
atatcaaatacatcaatggaattaaaatttattcataattacataaaatttgatgagaga
ttacattttataaatattttattagataaagttaaaaaaaatatatcttttattaattaa

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