KEGG   Weissella cibaria: AO080_00100
Entry
AO080_00100       CDS       T04106                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
wcb  Weissella cibaria
Pathway
wcb03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:wcb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    AO080_00100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:wcb03400]
    AO080_00100
DNA repair and recombination proteins [BR:wcb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AO080_00100
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AO080_00100
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind AAA_21 AAA_29 SMC_N DnaJ_CXXCXGXG AAA_25 ATPase TMEM106_N RsgA_GTPase nSTAND1 Zn_ribbon_TFIIB AAA_16 AAA_15 Cas12f1-like_TNB Viral_helicase1 DUF4350 cobW
Other DBs
NCBI-ProteinID: ALI31961
LinkDB
Position
complement(16634..19132)
AA seq 832 aa
MNMAFPIEVRGAKTNNLKNIDVDIPLGKMTGITGRSGSGKSSLAMGTLYGEGMRRYLNAL
STYTRRRISQSNQADVTSIRHLPSALALRQRPQVPDIRSTVGTMTEALNVLRLMFSRLGS
MVFPNGHRVGPTLAVAMDADMTGMDCPVCGVHFMPYGAEDFAFNSAGACPTCQGTGEVQE
INPALLINEELTIRDGAVNAWRIPGRTFMPLVAEAAGINIDVPYKDLPKAQQDQVLHGER
QEYEINIPSKSGKVFHMDHAVFENAYNAIADSMKSSTNERTIKRLNQFYTFQTCPTCHGN
WFNPALLSQHLRDKNIAELSDYTIEDLVTFARELTTTLPIDMQKMGQKLVDELLELLDAP
TQLGLDYLTLSRAGNTLSTGELQRIQLGRRIRNETTGVLYVLDEPTVGLHPENVAGLLRI
FKTLLEQGNTLVVVDHDMEVIGASDYVIEIGPGSGEHGGEVIFAGDVAAAKQSATLVAPY
LNGQAQAQTRTLAPSETLFDEGSIEIAVAQKNNLHDVTARFPKNRLTSVTGMSGAGKTTL
ILDLLAPGIVAQNEGRALPDGTRALDNSGVQTVVMVDSVPVGKNARSTVATYTNILDNLR
KMYAALPAAKERQFTASDFSYNAAGACPTCGGVGQITMDVQYLPDVTEVCPTCLGTRYRS
DVLDVKWHDYTIADLLALSVTEALTVFQDEPKILKTLTALSELGLDYLTLGESTPELSGG
EAQRLKLVTQIHQKQETSLFVFDEPSVGLHPLDIENLLHVFDLLLKRGATIITIEHDLEV
IANSDWIVDLGPGGGTHGGQIVGSGTPTDLAVSPESVTGHYLQAYLAKYQQA
NT seq 2499 nt   +upstreamnt  +downstreamnt
atgaacatggcatttccgattgaagtacgtggggcgaaaacaaataacctaaaaaatatt
gatgttgatattccattggggaaaatgactgggattaccgggcggagtggttctggtaaa
agttcacttgcgatgggaacgttatacggcgaggggatgcgccggtatcttaatgcacta
tcaacgtatacacgacgacgtattagtcaatcaaatcaggctgatgtgacgtcaatccga
catttgccatccgccttagcgttacgccaacggccgcaagtaccggatattcgatcaaca
gtcgggaccatgacggaggcgttaaatgtgttgcgcttgatgttttcacgactcggttca
atggtctttccgaatggtcaccgcgttggtccgaccctagcggtagcgatggatgctgat
atgacaggaatggactgtccagtctgtggcgtacatttcatgccatatggggcggaagat
tttgcgtttaactcagctggtgcctgcccaacttgccaaggaacgggggaagtgcaagaa
atcaatccagcgttgttgattaatgaagaattgacgattcgcgatggcgccgtgaacgct
tggcggataccaggccgtacattcatgcccctggtagcggaagcagcgggcatcaatatt
gatgtgccctacaaagatttacccaaagcacaacaagatcaggtcctccacggtgagcgg
caggaatatgaaattaacattccaagtaagagtggcaaggtgtttcatatggaccacgca
gtctttgagaatgcctataatgcgattgcagatagtatgaagagcagtaccaacgaacgc
acgattaagcggttgaatcagttttatacctttcaaacctgcccaacttgccatggaaat
tggtttaacccggcgttgctgagccaacacttgcgcgataaaaatattgcggaattgtcg
gattatacgattgaagatttggtaacttttgcccgcgagttaaccaccacattgccgatc
gacatgcaaaaaatggggcaaaagttggtcgatgaattattggaattactggatgcccca
acgcaactgggcttggattatctgacgctttcacgggccggtaacaccctatcaactggt
gaactgcagcgtattcaattaggccggaggattcgcaatgaaacgacaggcgttctgtac
gtacttgatgaaccaactgttgggctacacccagaaaatgtggccggtttactccggatt
tttaagacactgcttgaacaaggcaatacactggtggtggttgatcacgatatggaagtg
attggcgcgagcgattatgtcatcgagattggaccaggatctggtgaacatggcggtgaa
gttattttcgctggcgatgtggccgctgctaaacaatcagcgaccttggtggcgccatat
ttgaatggtcaggcgcaagcgcagacgcgtacactggcaccaagtgagacgctatttgat
gaaggtagcatcgagattgcagtcgcgcagaaaaataatttacatgacgtgacggcccgc
ttccccaaaaatcgtttaaccagtgtgacggggatgagtggcgccggcaagacaacgtta
atcttggatttgctggcccctggtatcgtggctcaaaatgagggacgcgcgttacctgat
ggtactcgggctttagataacagtggtgtgcagacagttgtgatggttgattctgtacca
gtcggtaagaatgcccgttcaacagtggcgacgtacacgaatattttggataacttgcgt
aaaatgtatgcggccttaccggcggctaaggaacggcaattcacggcaagtgatttttcg
tataacgcggctggggcttgtccaacgtgtggcggagtcggccaaattacgatggacgtg
cagtatttacctgacgtaactgaagtgtgcccaacttgtttaggtacccgttatcgatca
gacgtgctagatgttaagtggcatgactacacgattgctgatttgttggccttatccgta
acggaagccctaacagttttccaagatgaaccgaaaattttgaagacgttgactgcctta
tcagaattgggcttggactatttgacattgggtgaaagtacgcctgagctatctggtggc
gaggcccaacgtttgaaattggtcacgcagattcatcagaagcaggaaaccagtctgttt
gtttttgatgagccatcggtggggttgcatcccctcgatattgagaatttgttgcacgtg
ttcgacttgctgttaaagcgcggggcgacgattattacgattgaacatgacttggaggtc
atcgctaactcagattggattgttgatttggggcctggcggtggcacacatggtggccag
attgtgggcagtggcacgccaactgatttagcagtcagtcctgagagtgtgaccggtcac
tatttgcaggcgtatttggcaaaatatcagcaagcctga

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