Weissella cibaria: AO080_00635
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Entry
AO080_00635 CDS
T04106
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wcb
Weissella cibaria
Pathway
wcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO080_00635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wcb03019
]
AO080_00635
03009 Ribosome biogenesis [BR:
wcb03009
]
AO080_00635
Enzymes [BR:
wcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AO080_00635
Messenger RNA biogenesis [BR:
wcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AO080_00635
Ribosome biogenesis [BR:
wcb03009
]
Prokaryotic type
rRNA helicases
AO080_00635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Helicase_RecD
DUF7437
Motif
Other DBs
NCBI-ProteinID:
ALI32065
UniProt:
A0A0D1M4H5
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All DBs
Position
complement(129851..131425)
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AA seq
524 aa
AA seq
DB search
MKFSELGLSQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL
NMIDTDSNQVQALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQINGLSHGA
HIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQRQTLLF
SATMPPAIKRIGVQFMTEPEHIQIAAKELTTDLVEQYYVRVRDFEKFDTLTHILDVQQPK
LAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILVATDVAA
RGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGTSVTFISNAEMDYLKDIEKLTKK
RMLPLKPPTREEALAGRMTVAADSVEAVIAATSGSVDSEVIDTLVEKYDAKTLATALLGA
VANVSEMDAEFTLSRERPLPRKRSGFGGGSRNGGGYRGGRRDGGSRNGGGYRGRREGGRD
GERGQRERRSFDRGARTGSGDRSQRGRSGAPRRQSRDFVIKNND
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagagttgggtctatcacaagacctattgacggccattgagaagcatggc
tatgtagaggccacgccaatccaggaacaaacgattcctttgactttggctggtaaggac
gttatcggtcaagcccaaacgggaaccggtaagacggccgctttcggattgccaatcttg
aacatgattgacactgacagcaaccaagtacaagcacttgttgtctcaccaacacgtgaa
ttggctattcaaacacaagatgagctattcaagttgggacgcgataagcgtgttaaggta
caagctgtctttggtggtgctgatattcgccgccaaatcaacggtttgagccatggtgct
cacatcgttgttggaacgcctggtcgtttgatcgaccacatcaaccgtggcacgatcaac
ttgtcaaacgttaagactttggtcttggacgaagctgacgaaatgttgaacatgggattc
ttggaagacatcgagtctatcttgaaggccgttcctgatcaacgtcaaacgttgttgttc
tcagcaacgatgccacctgctatcaagcgtattggtgtgcaatttatgacggaaccagag
cacattcaaatcgctgccaaggaattgacaactgatttggttgagcaatactacgttcgc
gtgcgtgactttgaaaagtttgacacgttgacgcacatcttggatgtgcaacaacctaag
ttggccattatgtttggtcgtacaaagcgccgtgttgatgaattgactcgtggtttggaa
ttgcgcggctttaacgctgctggtatccacggtgacttgacgcaacaaaagcgttcacaa
gttttgaagcaatttaagaatggtgaaatcaagattttggttgccactgatgttgctgct
cgtggattggacgtttcaggtgttgactacgtttacaactttgacattccacaagattca
gaatcatacgttcaccgtatcggtcgtactggtcgtgccggtgctcacggaacttctgta
acgttcatctcaaatgctgaaatggactacttgaaggacattgaaaagttgacgaagaag
cgcatgttgccattgaagccacctactcgtgaagaggctttggctggtcgtatgacagtt
gcagctgattcagttgaagcagttattgcagcaacttcaggatcagttgattcagaagtt
atcgatactttggttgaaaagtacgatgcaaagactttggctacggctttgttgggagct
gttgcgaatgtttcagaaatggatgctgaattcacgttgtcacgtgagcgtccattgcca
cgtaagcgttcaggcttcggcggtggttcacgcaacggtggtggataccgtggtggtcgt
cgcgacggcggttcacgtaacggcggtggataccgtggccgtcgtgaaggtggtcgcgat
ggcgaacgcggacaacgcgaacgtcgttcattcgaccgcggtgcccgtacgggttcaggt
gatcgttcacaacgtggccgctcaggcgcaccacgtcgtcaatcacgtgactttgtcatc
aagaataacgattaa
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