Weissella cibaria: AO080_04455
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Entry
AO080_04455 CDS
T04106
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wcb
Weissella cibaria
Pathway
wcb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wcb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO080_04455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wcb03019
]
AO080_04455
03400 DNA repair and recombination proteins [BR:
wcb03400
]
AO080_04455
Enzymes [BR:
wcb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AO080_04455
Messenger RNA biogenesis [BR:
wcb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AO080_04455
DNA repair and recombination proteins [BR:
wcb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AO080_04455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
TniB
HHH
DUF5354
Motif
Other DBs
NCBI-ProteinID:
ALI32747
LinkDB
All DBs
Position
942971..944800
Genome browser
AA seq
609 aa
AA seq
DB search
MATALETLQQTFGYSSFREGQAEIIDAVMAGQRTLGIMPTGGGKSLTYQIPALMLDGITV
VISPLLSLMKNQVDELHEAGVPAVTLNSTQNDEEYRAAMNSLLNEEAKLLYLAPERLGSE
GTYALLNRLPISLVVIDEVHVLSQWGHDFRPSYLNAVGLINNLESAPRVMALTATATERV
QADLEAMLHIQHTVRTSVVRDNLTIRIEKGLNKRSKEDFITKYIREHRGESGIVYAPTRK
IVEALTETLTAAGINAVGYHAGMPDQARAQAQDDFIYDRRDVVVATNAFGMGINKSNVRF
VIHYGIPGSVEAYYQEIGRAGRDGLPSEAILLYAAADLQTQRFFIDNSDNQTPEYQNLQR
MKLQEMANYGATQMCLQRYITRYFGEDTPDCGRCTNCLDNRDAVDITTDAQKVLSHVVRM
AKSRGGENGFGKTLTAETLRGKLPDKFQWTNLDQLPTFGLLQGTARVHIMSLIDYLIAEG
YLRVTGQYAGLTVSPEGVSVLKGERQVKRRQDVRSIDDRVKAGSPSTRDDLDEAQRAVFE
ALRTWRLELARVTEIPPFIIFNDRTLVELAKQQPRNNAELMAVPGIGDAKAERYGKEVLA
VIAKATETE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcattagagacgctacaacaaacatttggttatagctcgtttcgcgaggga
caagctgaaattattgatgccgtaatggctggccagcgcacgttggggattatgccaact
ggtggtggtaagtcattaacataccaaatcccagcgctgatgttggatggcatcacggtg
gtcatttcgccattgctatctttgatgaaaaatcaggttgatgaattgcatgaggcaggt
gtgccggcagtgacattgaattcaacccaaaatgatgaggaatatcgggcagcaatgaac
agcctgctgaacgaagaggcgaaactgctgtatttggcacctgaacggttagggagtgag
gggacgtatgccttacttaaccgcttgccaatttcgctagtcgtgattgatgaggttcac
gtactttcgcaatggggtcatgatttcaggccaagttatttgaacgcggttgggttaatt
aataatctagagtctgcgccccgagtgatggcattgaccgcaacagctacagaacgggtg
caagccgacttggaagcgatgttgcacattcaacatacggttcggacgagtgttgtccgt
gataatttgacgatccgcattgaaaaagggctgaataaacggagtaaggaagattttatt
accaagtatattcgcgaacatcgtggtgaatcaggcattgtttatgcgccaacccgcaag
attgttgaagcgttgacggagacactaacggcggcgggcattaacgcagttggctatcat
gctggtatgcctgaccaagcgcgcgcccaagctcaggatgattttatttacgatcggcgt
gacgtggttgtggcgacaaacgcctttggaatggggattaacaagtcgaacgtccggttt
gtgattcactacgggattccaggctcagtggaagcctattatcaagaaattggtcgtgcg
ggtcgtgatgggttaccctccgaagctatcttgctgtatgcggcggccgatttacaaaca
caacgcttcttcattgataatagtgataatcagacgccagagtaccaaaacttgcagagg
atgaagttacaggaaatggcaaactatggcgcgacgcaaatgtgtttgcaacgctatatc
acccgttattttggtgaagatacgccggattgtggccgttgcaccaattgcttggataac
cgtgatgcggttgatatcacgacggatgcccaaaaggtattgagccacgtggtccgcatg
gcaaagtcacgtggtggcgagaatggttttggtaaaacgctgacggctgaaacattacgt
ggtaaattaccggataagttccaatggaccaatttggatcaactgccaacgtttgggtta
ctccaagggaccgctcgggtgcatatcatgagtttgattgactacctgattgcggagggc
tacctacgtgtgacggggcagtatgctggtttgactgtctcgccagagggcgtgtcggtg
ttgaagggggagcgtcaggttaagcgtcgtcaagatgttcggtcgattgatgatcgtgta
aaggcaggctcaccaagtacgcgtgatgatttggatgaggcgcaacgtgcggtctttgaa
gcgttgcgaacttggcgtttggagctggcccgggtgacggaaattccgccattcattatt
tttaatgatcgtactttggtcgagttagccaagcagcaaccgcgcaataacgcagagctg
atggctgtgccaggaattggggatgctaaggctgaacgttacggtaaggaagtgttggcc
gtaattgctaaagcaactgaaactgaataa
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