Weissella cibaria: AO080_08995
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Entry
AO080_08995 CDS
T04106
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
wcb
Weissella cibaria
Pathway
wcb03410
Base excision repair
wcb03430
Mismatch repair
wcb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
wcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AO080_08995
03430 Mismatch repair
AO080_08995
03440 Homologous recombination
AO080_08995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wcb03400
]
AO080_08995
DNA repair and recombination proteins [BR:
wcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AO080_08995
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AO080_08995
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AO080_08995
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
DUF7864
Motif
Other DBs
NCBI-ProteinID:
ALI33567
LinkDB
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Position
complement(1887206..1889512)
Genome browser
AA seq
768 aa
AA seq
DB search
MISPHYQWDFPAVANEAAAKEIAETFGVSELVAKILVNRGYDTIETANAFLRPGIEGLYD
PFLLHDMDVAITRIMTAIDNGEKIVVYGDYDVDGITSTAIMTWALELMGADVSYYVPNRF
KDGYGPNLAQYQRLAGEGMQLLITVDNGVSGRDEVAWLMNNGVDVIVTDHHEMPAELPEA
VAVVHPRHPEGAYPFGGLSGAGVAFKVASALLEEPADEVMDLAALGAVADVMELVDENRA
IVAMGLANLKEDPRPGLAALLQTAGTNQADIDSMTIGFTIGPRINALGRLADATDGVRLL
LADDPEEASALAGQIETLNRERQELVATISDEALAQAQTLTADPVLVIAGHGWHEGILGI
VASKVVEATGKPAIVLNDEDGQMKGSGRSVPAFDLFAGLDGHRDLLTAFGGHASAAGMTI
PTANLQAVRDVLRTEADAQGLAEAGLPEIRIAAEVTAKEFNAQNYEQLQVLAPFGEGNPE
PLFAVALNGVQNVKTMSEGKHLRFTASTQVGSLPVIAFGRGPLAEDLAGRFESIKIVGTM
SENRFRGDVTYQMMLTDIEAAGSSLLDWRTTRLTRQTLAEPASYIFFNKKHYEQLGPTIQ
APGEAIYWEDAFNRTSVGTMAFVDMPEELSQLADLLKFVPAGRLAPIFYTKSPKYLQKMP
SKADFAKVYKFARSFSDVSLRTQYDAIVSHLQIDRNMLTLILQVFSDAKFVTIIDGVLNA
VPAPQQVVLEEMPSYQRFVAQRELEQQLIYSSTSELETLLTNLSKQES
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgatttcaccacactatcaatgggatttcccggccgttgcaaacgaggcggcagccaaa
gaaatcgctgagacctttggtgtttcagaattggttgccaaaattttagttaatcgtggc
tatgataccattgaaacggctaatgcgtttttgcgtcctggtattgaaggcttatatgac
ccgttcttattacatgatatggatgttgcgattacacgcatcatgacggccattgacaat
ggtgaaaagattgtcgtgtatggggattatgatgtggacggcattaccagtaccgccatc
atgacatgggccttggagttgatgggcgccgatgttagttattatgtgcctaaccgtttt
aaagatggttacggccctaatttagcgcagtatcaacgtttagctggtgaaggcatgcaa
ttattgattacagtcgataatggtgtgtcaggacgggatgaagtcgcttggttaatgaat
aacggggtcgacgtcattgtgactgatcaccacgagatgcctgccgagttaccagaggcg
gttgcggtggttcacccacgtcacccagagggggcatatccatttggtggcttatctggt
gccggcgtggcctttaaagttgcctcggctttgttggaagagccagctgatgaagtgatg
gatttggccgctttgggagcggtcgctgatgtgatggaattggttgacgaaaaccgggca
attgttgcaatgggcttggctaatctcaaggaagatccacgccctgggttagcagccttg
ctacaaactgccggcactaatcaagctgatatcgattcaatgacgattggttttaccatc
ggaccacgtataaatgcactcggacgtttagccgatgcaacggatggtgtccggctgttg
ttagccgatgatccagaggaagcgagtgcgttggctggtcaaattgaaacgttgaatcgt
gaacgacaggaattggttgcaacaatttctgatgaggcgttagcacaggcacaaacgttg
acggctgacccggtgttggttatcgctggccacggttggcatgaaggtattcttggtatt
gttgccagcaaggtagtcgaggctacaggcaagccagcaatcgtgctcaatgacgaagat
ggtcagatgaaaggttcgggccgttctgtgccggcatttgacttattcgccggtctggat
ggtcaccgagatttgttaaccgcatttggtggtcacgccagtgctgcgggaatgacaatt
ccaacagccaacttgcaagccgttcgcgacgttttacggactgaagcggatgcgcagggc
cttgcggaagctggtttaccagaaattcgcattgcagccgaagtaacggccaaagagttc
aatgcgcagaattatgaacagctgcaagtcttagcaccctttggtgaaggtaatccagag
ccgctgtttgctgtggcgttgaacggggtacaaaatgttaaaaccatgagtgaaggcaag
cacctccgtttcacggcaagcacacaagtgggctcgttgccggtgattgcgtttggccgt
ggaccgcttgccgaagatttagcaggtcgttttgaatcaatcaaaattgtggggacgatg
agcgagaatcgtttccgtggcgatgtgacctatcaaatgatgctaacggatattgaagct
gcggggtcatcgctgctggattggcggacaacccgcttaacgcgacaaacattagcggag
ccggctagttatattttctttaataaaaaacactacgaacagttaggtccgacgattcag
gcccccggcgaagcgatttactgggaggatgcttttaatcgaacgagcgttgggacaatg
gcctttgttgatatgccggaggagctaagtcagttagcggatttgctgaaattcgtgccg
gcaggtcgattggccccaatattctacacgaagtcaccaaagtatttacaaaagatgcca
tcgaaggccgatttcgcgaaagtttacaaatttgctcgatcattttcggatgtttcgttg
cgaacgcagtatgatgcaattgtttcgcacttacaaatcgatagaaatatgttaacctta
atattgcaggtgttttcagacgcaaaatttgttacaattattgatggcgtcttaaacgcc
gtgcctgcgccacaacaagtggtcttggaagaaatgccgtcatatcagcgtttcgtggca
cagcgagaactagaacaacagttgatttacagttcgacaagtgaactcgaaacattgttg
acgaacttaagtaagcaggagagctaa
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