Weissella confusa: C6P13_06610
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Entry
C6P13_06610 CDS
T05951
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
wcf
Weissella confusa
Pathway
wcf03410
Base excision repair
wcf03430
Mismatch repair
wcf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
wcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C6P13_06610 (recJ)
03430 Mismatch repair
C6P13_06610 (recJ)
03440 Homologous recombination
C6P13_06610 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wcf03400
]
C6P13_06610 (recJ)
DNA repair and recombination proteins [BR:
wcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C6P13_06610 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C6P13_06610 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C6P13_06610 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
DUF4254
DUF6324
Motif
Other DBs
NCBI-ProteinID:
QBZ02943
LinkDB
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Position
complement(1358616..1360922)
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AA seq
768 aa
AA seq
DB search
MISPRYQWDFPAVANEGAAKEIAETFGVSDLVAKILVNRGYDTVESANAFLRPGMDALYD
PFLLHDMDVAIERIMTAIDNGEKIVVYGDYDVDGITSTAIMTWALELMGADVSYYVPNRF
NDGYGPNMAQYQRLASEGMQLLITVDNGVSGREEVNWLMANGVDVIVTDHHELPEQLPDA
VAVVHPRHPEGNYPFGGLSGAGVAFKVASALLEEPADEVMDLAALGAVADVMELVDENRA
IVAMGLANLKEDPRPGLAALLEVAGTAQADIDSMTIGFTIGPRLNALGRMADATDGVRLL
LSDDPEEASELAKRIDKLNRERQDLVASISEEALAQAATLAADPVLVVAGSGWHEGVLGI
VASKLVEATGKPAIVLNDEDGQMKGSGRSVAAFDLFAALDGHRDLLTAFGGHASAAGMTI
PTANLQAVRDVLREEAANQQLAEAGLPEIRIAAEVTAKDFNRQNYEQLQVLAPFGEGNPE
PLFAVNLAGVQNVKTMSEGKHLRFTAETAAGTLPVVAFGRGPLAEDLAGRFESIRIVGTM
SENSFRGDVSYQMMLTDIEANGSSLLDWRTTRLTTQTFANPATYIFFNKKHYEQLAPTIK
APAEALYWEDAFNRTSVGTMAFVDVPEDMSQLADLLKFVPAGRLAPIFYAKTPAYLQKVP
SKADFAKVYKFARSFQDIALRTQYDAVLAHLGMERSMLTLILQVFLDAKFVTIVDGVLNA
VPEPAPMALEENASYQQFLARRQLEEQLIYSSTSELESLLTNLSKQES
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgatttcaccacgctatcaatgggattttccagctgtagccaatgaaggggctgccaaa
gaaatcgctgagacattcggtgtttcagatttggtcgctaaaatcttagttaatcgtggc
tatgacactgttgaaagcgccaatgcctttttgcgtccggggatggatgcgctatatgat
ccgtttttgttgcacgacatggatgtggcaatcgaacggattatgaccgctatcgacaat
ggtgaaaagattgttgtgtacggtgattatgatgtcgacggtattaccagtacagccatt
atgacgtgggcccttgagttgatgggtgccgatgtgagttattatgtaccgaaccgtttt
aacgacggttacgggccaaatatggcacaatatcaacgcttggctagcgaagggatgcag
ttgttgattacggtcgataacggtgtctctggccgcgaagaagtgaactggttgatggcc
aatggtgttgatgtcattgtgaccgaccaccacgaattgccggaacaattgccagatgcc
gtcgctgttgtgcacccacgacacccggagggcaattacccattcggcggtctttcaggt
gccggtgtggcctttaaggtggcatcagcgttgctagaagagccagccgatgaggtgatg
gacttagcggccttgggtgcagtggctgacgtcatggagttggtcgatgagaatcgtgcg
attgtggcgatgggcttggcaaacttgaaagaagatccacgccctggtttggcggctttg
ttagaagttgccggtactgcgcaagctgacattgattcaatgacgattggtttcacgatt
ggaccacgtttgaacgcgttgggccgcatggctgatgcaacagacggtgtgcgtctgttg
ttgtcagatgatcctgaggaagccagtgaactagctaagcgcatcgataagttgaatcgt
gagcgtcaagacttggtggcgtcgatttcggaagaagcacttgctcaagcagccacactt
gcagcagatccagtattggtggttgctggcagtggctggcacgaaggtgttttagggatt
gttgccagcaagttagttgaagcaactggcaagccagcgattgtcttgaatgacgaagat
ggtcaaatgaaggggtctggtcgttcggtggccgcctttgatttgttcgcggcacttgat
ggccaccgtgatctgttgactgcgtttggtggtcacgcgagcgcggctggtatgacgatt
ccaacggccaatttgcaagcggtacgtgatgttttgcgcgaagaggcagccaatcaacag
ttggcggaagctggtttgccagaaattcgaatcgctgctgaagtaacagccaaggacttt
aaccggcaaaactatgagcaattgcaggtgctggcaccatttggtgaagggaatcctgaa
ccattgttcgccgttaatttggcaggcgtccagaacgttaagacgatgagtgaaggtaag
cacttgcgctttacagccgaaacagctgccggtacattgccagtggtcgcgtttggtcgt
ggaccactggctgaagacctggcgggccgttttgagtcaattcgcattgttgggacgatg
agtgagaatagtttccgtggggatgtgtcatatcaaatgatgctcacggatatcgaagct
aatggctcatcattgttagactggcgtacaacgcgtttgacgacccagacgtttgctaac
ccagccacgtatattttctttaacaagaagcattatgaacaactagcgccaacaattaag
gcaccagctgaagcgttgtattgggaagatgcctttaaccgaaccagtgtcggcacaatg
gcctttgtggatgtacctgaggatatgtcacaattggccgacttgctaaagtttgtgcca
gcgggtcgtttggcaccaatcttttatgcgaaaacaccggcatatttgcaaaaagtccct
tcaaaagccgactttgcgaaggtgtacaagtttgcccgttcgttccaagatattgcactg
agaacccaatatgatgcggttttggcgcacttggggatggaacgttcgatgttaacgttg
atattacaggtgtttttggacgcaaagtttgttacaatagttgatggtgttttaaatgcc
gtacctgagccagcgccaatggcgttagaggaaaatgctagttatcagcaattcctggct
cgtcggcaacttgaagagcaattgatttacagttcaacttctgaattggaatcattgctc
acgaacctaagtaagcaggagagctaa
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