Weissella confusa: C6P13_07390
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Entry
C6P13_07390 CDS
T05951
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
wcf
Weissella confusa
Brite
KEGG Orthology (KO) [BR:
wcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
wcf03009
]
C6P13_07390
Enzymes [BR:
wcf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C6P13_07390
Ribosome biogenesis [BR:
wcf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C6P13_07390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
PrmA
RrnaAD
MTS
Methyltransf_11
TRM
Motif
Other DBs
NCBI-ProteinID:
QBZ03096
LinkDB
All DBs
Position
complement(1542029..1543396)
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AA seq
455 aa
AA seq
DB search
MKKKAPVVKNQEFDATVIDLTYEGNGVVKVDDFPIFVPNAVPGEEIRVGITKVAGTYAFG
RVVKTLKESEDRNKDVDVATLTTGIAPLAHLKYDAQLRFKQNQIQELFKKQHVDVEVSET
LGMENPTGYRNKAQIPTRELRGELTTGFFRRGSHNLMPIEDFYIQDPEIDKAIVVIRDIL
RKYHIPAYNEFEHTGVIRNIMVRRGYYSHEMMVVLVTRSKKLPGAEMIVEEIREALPEVK
SIIQNVNQEKTNVILGEKNNTLWGKNVITDTLFGKKFAIGPNSFYQVNPQTTETLYQLAA
DKAGLNGDEEVIDAYSGIGTISLTIADRVKSVLGVEIVPGAVDDAKRNADINGVTNAKFE
LGKAEEKMVEWHDAGMRPDVIFVDPPRKGLTPELIDAATGMEPEKFVYISCNPATLARDT
VQILENGYHIEGPVQPIDQFPQTTHIESITVFVKD
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagcgccagtggtgaagaaccaagaatttgacgcaacggtcatcgattta
acgtacgaaggtaacggagtcgttaaggttgatgatttcccaattttcgtcccaaatgct
gttccgggtgaagaaatccgtgtcggcattacgaaggttgctggaacgtacgcattcgga
cgtgttgtgaagacgttgaaggaatcagaggaccgcaacaaggatgttgacgtcgcaacg
ttgacgacaggaattgcacctttggctcacttgaagtacgatgcacaattgcgtttcaag
caaaaccaaatccaagaattgttcaagaagcaacacgttgatgttgaagtttctgagaca
cttggtatggagaacccaactgggtaccgtaacaaggcgcaaattcctacgcgtgaattg
cgtggtgaattgacgactggattcttccgtcgtggttcacacaacttgatgccaattgag
gatttctacattcaagatcctgaaattgacaaggctatcgtggttatccgtgatattttg
cgtaagtaccacattccagcctacaacgaatttgagcacactggtgttatccgtaacatt
atggtgcgtcgcggttactacagccacgaaatgatggttgttttggtaacacgttcaaag
aagttgccaggcgcagagatgattgttgaagaaattcgcgaagctttgcctgaagttaag
tcaatcattcaaaacgttaaccaagaaaagacaaacgttatcttgggcgagaagaacaac
accctttggggaaagaatgtcatcactgacacgttgttcggtaagaagtttgccatcgga
ccaaactcattctaccaagttaacccacaaacgacggaaacgttgtaccaattggctgct
gacaaggctggcttgaatggtgatgaagaagttatcgacgcctactcaggtatcggaacg
atttcattgacgattgctgaccgcgttaagtctgtcttgggtgtcgaaatcgtacctggt
gccgttgacgacgccaagcgtaacgccgacatcaacggtgtgacgaatgccaagttcgaa
ttgggtaaggccgaagagaagatggttgagtggcacgatgctggtatgcgaccagacgtc
atcttcgttgatcctcctcgtaagggattgacgccagaattgatcgacgccgcaactggc
atggaaccagaaaagttcgtgtacattagctgcaaccctgcaactttggcacgtgacacg
gttcaaattttggagaacggttaccacattgagggacctgttcaaccaatcgaccaattc
ccacaaacgacgcacattgaatcaatcactgtgttcgttaaggactaa
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