Weissella confusa: C6P13_09315
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Entry
C6P13_09315 CDS
T05951
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wcf
Weissella confusa
Pathway
wcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6P13_09315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wcf03019
]
C6P13_09315
03009 Ribosome biogenesis [BR:
wcf03009
]
C6P13_09315
Enzymes [BR:
wcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6P13_09315
Messenger RNA biogenesis [BR:
wcf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6P13_09315
Ribosome biogenesis [BR:
wcf03009
]
Prokaryotic type
rRNA helicases
C6P13_09315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
Helicase_RecD
DUF7437
Motif
Other DBs
NCBI-ProteinID:
QBZ03440
LinkDB
All DBs
Position
complement(1949759..1951342)
Genome browser
AA seq
527 aa
AA seq
DB search
MKFSELGLTQDLLTAIEKHGYVEATPIQEQTIPLTLAGKDVIGQAQTGTGKTAAFGLPIL
EMIDTDSNQVQALVVSPTRELAIQTQDELFKLGRDKRVKVQAVFGGADIRRQINGLSHGA
HIVVGTPGRLIDHINRGTINLSNVKTLVLDEADEMLNMGFLEDIESILKAVPDQRQTLLF
SATMPPAIKRIGVQFMTNPEHIQIAAKELTTDLVEQFYVRVRDFEKFDTLTRILDVQQPK
LAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRSQVLKQFKNGEIKILVATDVAA
RGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGATGTSVTFISNAEMDYLKDIEKLTKK
RMQPLKPPTREEALAGRMSVAADSVEDVIAATSGAVDSEVIDKLVEKYDAKTLATALLGA
VANVAEMDTEFTLSRERPLPRKRSGFGGGSRNGGGYRGGRREGGERRGGGYRGRREGGRD
GRDGDRGQRERRSFDRGSRTGSGDRSQRGRSGAPRRQSRDFVIKNND
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagagttgggtcttacacaagacctattgacggccatcgagaagcatggt
tacgtagaggccacgccaatccaggaacaaacgattcctttgactttggctggtaaggac
gttatcggacaagcccaaacgggtaccggtaagacggccgcattcggtttgccaatcttg
gaaatgattgacacagacagcaaccaagtacaagctcttgttgtctcaccaacacgtgaa
ttggctatccaaacacaagatgagctattcaagttgggacgcgataagcgcgttaaggta
caagctgtctttggtggtgcagacattcgccgccaaatcaacggtttgagccacggtgct
cacatcgtcgttggtacaccaggacgtttgatcgaccacatcaaccgtggcacgattaac
ttgtctaacgttaagactttggtcttggacgaagccgacgaaatgttaaacatgggattc
cttgaagatatcgaatctatcttgaaggctgttcctgatcaacgtcaaacgttgttgttc
tcagcaacgatgccacctgctattaagcgcattggtgtgcaatttatgacgaacccagag
cacatccaaatcgctgccaaggaattgacaacggatttggttgagcaattctacgttcgt
gtacgcgactttgaaaagttcgacacgttgacgcgcatcttggatgtgcaacaaccaaag
ttggctatcatgtttggtcgtacgaagcgccgtgttgatgaattgacacgtggtttggaa
ttgcgtggctttaacgcagccggaatccacggtgacttgacgcaacaaaagcgttcacaa
gttttgaagcaattcaagaacggcgaaatcaagattttggttgccactgacgttgctgct
cgtggtttggacgtttctggtgttgactacgtttacaactttgatattccacaagattca
gaatcatacgttcaccgtatcggtcgtactggtcgtgccggtgctactggaacttctgta
acgtttatctcaaacgctgagatggactacttgaaggacatcgaaaagttgactaagaag
cgtatgcaaccattgaagccacctacccgtgaagaagcattggctggccgtatgtcagtt
gctgctgattcagttgaagatgtcattgcggcaacttcaggtgccgttgactcagaagtc
atcgacaagttggttgaaaagtacgatgccaagactttggcaacggctttgttgggtgca
gttgctaacgtagctgagatggatactgagttcacgttgtcacgtgagcgtccattgcct
cgcaagcgttcaggcttcggtggcggttcacgcaacggtggtggataccgtggtggtcgt
cgcgaaggtggcgagcgtcgtggtggtggataccgtggccgtcgtgaaggtggtcgtgac
ggacgtgatggcgatcgcggacaacgcgaacgtcgttcattcgaccgtggttcacgcact
ggatcaggtgaccgttcacaacgcggtcgctcaggtgcaccacgtcgtcaatcacgtgac
tttgtcatcaagaacaacgactaa
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