Weissella confusa: C6P13_09555
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Entry
C6P13_09555 CDS
T05951
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
wcf
Weissella confusa
Brite
KEGG Orthology (KO) [BR:
wcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
wcf03009
]
C6P13_09555
Enzymes [BR:
wcf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C6P13_09555
Ribosome biogenesis [BR:
wcf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C6P13_09555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_31
MTS
Methyltransf_15
RrnaAD
AAA_17
PrmA
TRM5-TYW2_MTfase
Methyltransf_4
PCMT
N6_N4_Mtase
DOT1
Motif
Other DBs
NCBI-ProteinID:
QBZ03482
LinkDB
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Position
complement(2008073..2009452)
Genome browser
AA seq
459 aa
AA seq
DB search
MSNTIIPVKLGEQREGVVIDVLYTGLGVIMVDDYPIHLENAFEGEKILFEVTQVNRKFGR
AKVVEILEASPDRVASGKDYLLEAGIAPYVNLAYDAQLRLKQQQVQKLYKEYGIDVDVAP
TIGMDNPTHYRNKTVVPVKYVDGKLTTGFIKKRTPGDIVPLDDYFVNDEKIDQIIGIVRD
ILDAHKVSVFDDDTQEGEMRYIMVRRGYYSHEVMVVLVTQTATLTDEDAIAADIAEAVDG
IKSIILNHNPRSLHVLTSGDNRTLWGADAIHDKLLDIDFEIGPNSFYQVNPQTTEVLYDM
AATKGELKESDTVIDAYSGIGTIGLTVADRVDKVLGVEVIERAVIDAQKNVANNNVKNAE
FVTADAPEQMQKWKDGGLKPDVIFVDPPRRGLTEDLLDAVADMNPDRFVYVSCNPETMAR
DAKYLIDKGFRIKGDIQPLDQFPQTAHVEAVAVFEPINK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacaattattccggtaaagctgggtgagcaacgcgaaggtgttgttatcgac
gtgctttacactggattgggagtcatcatggttgatgattatccaattcatttggaaaac
gccttcgaaggcgagaaaattttatttgaggtgacgcaggtcaatcgtaagttcggtcgt
gccaaggttgtagaaattcttgaagcgtcaccagaccgcgtggcgtctggtaaggactat
ttgcttgaggctggtatcgcaccgtatgtcaacttggcctacgatgcgcaattgcgtttg
aagcaacaacaagtgcaaaagttgtacaaggaatacggtattgatgtcgatgttgcgcca
accatcgggatggataatccaacccactatcgcaataagacggttgtgccagtgaagtat
gttgatggcaagttgacgactggcttcattaagaagcgtacgccaggtgacattgtgcca
ttggatgattacttcgttaacgacgaaaagattgaccaaattatcgggattgtgcgtgat
attttggacgcccacaaggtatcggtttttgatgacgatacccaagaaggtgaaatgcgc
tacatcatggtacgtcgtggttattacagtcatgaagttatggtggtattggtaacgcaa
acggcaactttgacggatgaagatgcgattgcggctgatattgcggaggctgttgatggc
atcaagagtatcatcttgaaccacaatccacgtagcttgcacgttttgacgtcaggcgat
aatcgcacgttgtggggcgccgacgctatccacgacaagttgttggatatcgattttgaa
atcggaccaaattcgttctatcaagttaacccacaaacgacggaagtgttgtacgacatg
gccgcaacaaagggtgagttgaaggaatctgacacggttatcgatgcttattcaggtatc
ggaacaattggtttgacggtcgctgaccgtgtcgacaaggtgttgggtgttgaagtgatt
gagcgtgccgtgattgacgcgcaaaagaacgtcgctaacaacaacgtgaagaacgctgaa
ttcgtcacagctgacgcacctgaacaaatgcaaaagtggaaagacggtggcttgaagccg
gacgttatctttgttgatccgcctcgtcgtggtttgacggaagatttgttggatgccgtt
gcggacatgaatcccgaccgctttgtttatgtgtcatgcaacccagagacaatggcgcgc
gatgctaagtacttgattgacaagggcttccgcatcaagggcgacattcaaccgctggat
caattcccacaaactgctcacgttgaagcggtggcggtgtttgagccaattaataagtaa
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