Weissella confusa: C6P13_10030
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Entry
C6P13_10030 CDS
T05951
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wcf
Weissella confusa
Pathway
wcf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6P13_10030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wcf03400
]
C6P13_10030 (mfd)
Enzymes [BR:
wcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6P13_10030 (mfd)
DNA repair and recombination proteins [BR:
wcf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C6P13_10030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
Hydrolase_6
Motif
Other DBs
NCBI-ProteinID:
QBZ03557
LinkDB
All DBs
Position
complement(2136726..2140238)
Genome browser
AA seq
1170 aa
AA seq
DB search
MEITGLLQQDAEFQQLASGLKKGGRHLMTGISGTARTVYLAALQQETQRPMVVVGDSQFH
ADQLAEDLAAMLGDEHVAVFPAEETLSAEVAVTSLDTRLARVQALHLLLTDPQAVVVTGV
AGVMRYLPPVKAFADAAITLDFDHDYELAELQAKLVQMGYQRNGSVEQPGEFAVRGSIVD
IYPLDADNPVRLDFFDTALDSLRSFDAETQRSLENLDSITILPATDLVIDADDLATATTN
LEVAMTEARDKLDGADKRHLTEAMSPLLSMMSQGGLLPEIRQYLHILYPDAVSLLDYLPA
DGIAVFDDYPRALENADQITLDNQNWWTDEMAEQRVLPDPDLGWQLADLARDVQQASLVF
SPLQRGIGQLRQTSLTNLTVRPAQQFFGQMPMLKSEVARWQKSGETIIFLTNTTERQAKL
VQTLADFGVKINEVAPDALAPGRTQVTTMPLSAGFELPAQKLIVLTERELFQQVRKKAPK
RQTLSNAERIKSYNELKPGDYVVHVNHGVGVYEGMQTIENRGVKQDYITIAYQKDAKIFI
PVTQLDLVQKYVGAAEKAPKINKLGGTEWQKAKAKVAKKVEDIADELLQLYAERELKQGY
AFAPDDDVIRAFEDAFPYPETPDQIRSTKEIKADMEKSRPMDRLLVGDVGFGKTEVALRA
AFKAVHDGKQVAMLVPTTILAQQHYESMLSRFDGFGVNVAIMSRFQTKKQMDETKEGLKN
HTIDVVVGTHRILSKDIEFGDLGLLIIDEEQRFGVKHKERLKALQTNVDVLTLTATPIPR
TLNMAMVGVRDLSVIETPPANRYPIQTYVMEQNGRVTASAIEREMARGGQTYYLHNRVED
IEQVTAMIESLVPDARVGYIHGQMTEAQMEGILVDFINREYDVLVTTTIIETGVDIPNAN
TLFVENADHMGLAQLYQLRGRVGRSNNIAYAYFTYPGTRSLNEESEKRLTAIRDFTELGS
GFKIAMRDLSIRGAGDLLGQSQHGFINAVGYDLYTQMLNEAVAEKQGKRKQTFDAELDVQ
VEAYLPADYVADGPQKIDLYQRIRKAKTSAEFEEIEDDLLDRFGELPEAAQRLLLVGRLK
AAADRVGIATIRRDFKRQNILVVTFDARSKFTAQQFTQALALAKVRGQVVVPDPVKAEVP
IQPNQTAEEWLTGLLTVFNTLAPEEGVANA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggaaattacaggtctacttcagcaagatgctgagtttcaacaactcgcatctggtctg
aaaaaaggtggccgtcatttgatgaccgggatttccggcaccgcgcgcacggtgtatttg
gcggcattacaacaagaaacccaacgcccaatggttgtggttggtgatagccagtttcac
gcggatcaattagctgaagatttggccgccatgttgggtgatgaacacgtcgcggttttc
ccagctgaggaaacgttatctgcagaagtggccgtgacatcattagacacgcgattggct
cgggtgcaagcgttgcacctattgctaacggatccacaggcagtggttgtgactggcgtt
gcgggtgtcatgcgatacttgccaccagttaaggcgtttgcggatgctgcgattacgctt
gattttgaccatgactatgaattagctgagttgcaggcgaagttggttcagatgggatat
cagcgtaatggatcagttgaacaaccgggtgaatttgctgtgcgtggttcaattgttgat
atttatccattggatgccgacaatccggtgcgtttggacttctttgatacggcattggat
tcactacgtagttttgacgcagaaacgcaacgtagcctagaaaacctggacagcatcacg
attttgccagcaacagatttggtaattgatgcggatgatttagcaacagccacgacaaat
ttggaagttgccatgaccgaagcccgcgataagttggacggcgctgataagcgtcacttg
actgaagcgatgagcccattattgtcaatgatgagccagggtggtttgttgccagaaatt
cgtcaatatttgcacatcctttaccctgacgcagtgagtctgttggattatttgcctgct
gatggtatcgcggtgtttgatgattatccacgtgcgttggaaaacgccgatcaaatcacg
ttggataaccaaaattggtggacagatgagatggccgagcaacgcgtcttgccagatcct
gatttgggttggcaattggcagatttggcgcgtgatgtgcaacaagctagtttggtattc
tcgccattgcaacgtggaattggtcaattgcgtcagacaagtttgacgaatttgacggtg
cgtccagcgcaacaattctttggccaaatgccaatgctgaagagtgaagtggcacgctgg
cagaagtcgggtgaaaccattatctttttgacgaatacaaccgagcgacaagctaagttg
gtccaaaccttggcagactttggtgtcaaaattaatgaggttgcgccggatgctttggcg
cccgggcgaacccaagtgacgaccatgccgctgagtgctggttttgaattgccagcccaa
aagttgattgtgttgacagaacgtgaattgttccagcaagttcgcaagaaggctcctaag
cgccaaacgctatcaaacgcggaacgtattaagagttataacgagctaaagcccggtgac
tatgtggttcacgtgaaccacggtgtcggtgtctatgaaggcatgcaaacgattgaaaac
cgtggcgttaagcaggactacatcacgattgcctaccaaaaggatgcgaagattttcatt
ccggtcacgcaattggacttggtacaaaagtatgtcggcgcggctgagaaggcccctaag
attaataagttgggtggcacggaatggcagaaggcgaaggccaaggttgctaagaaggtt
gaagacattgcggatgaattgctccagctatatgccgagcgtgagttgaagcaagggtat
gccttcgcaccagatgatgatgtcattcgcgcctttgaagatgctttcccataccctgaa
acccctgatcaaattcgttcaacgaaggaaatcaaggctgatatggaaaagtcgcgtccg
atggatcgcttgttggtcggggatgttggttttggtaagacggaagttgccttgcgcgca
gcctttaaggcggtgcacgatggtaagcaagttgcgatgttggtgccaacgacgattttg
gcccagcaacactatgaatcaatgttgagtcgttttgatgggtttggtgttaacgtggcc
atcatgtctcgtttccaaactaagaaacaaatggacgagacaaaggaagggctgaagaac
cacacaattgatgtcgtggtcggtacgcaccgtattttgtctaaggatattgagtttggt
gacttgggcttgttgattatcgacgaggaacaacgttttggtgtgaaacacaaggaacgt
ttgaaggcattgcaaacgaatgttgacgtcttgacgctaactgccacgccaatcccacgt
actttgaacatggcgatggtcggcgttcgcgatttgtctgttattgaaacaccgccggcc
aaccgttatccaattcaaacgtatgttatggaacaaaatgggcgtgtgacggcaagcgcg
attgaacgagaaatggcgcgtggcggccaaacgtattacctccacaaccgtgtagaagat
attgaacaagtcacggcgatgattgagtccttggtaccggatgcgcgggttggttatatc
cacggtcaaatgaccgaggcccaaatggaaggtattctggttgatttcattaaccgtgaa
tacgacgttctggtgacgacaaccattatcgaaacaggtgtggacattccaaacgcgaat
acgctgtttgttgaaaatgctgatcacatgggtctggcacaactttatcagttgcgtggt
cgcgttggtcgttcaaacaatattgcctatgcgtactttacgtatccgggaacgcgttcg
ttgaacgaggaaagcgaaaagcgtttgacggccattcgtgatttcacggagctaggttct
ggttttaagattgcgatgcgtgatttgtcgattcgtggtgcgggtgacctactgggtcaa
tcacaacacggcttcattaacgcggttggatatgatttgtacacgcaaatgttgaatgaa
gccgttgctgaaaagcaaggtaagcgtaagcaaacgttcgatgccgaacttgatgtgcaa
gttgaagcgtacttgccggccgactatgtagcagatggtccacaaaagattgatttgtat
caacgtattcgtaaggctaagacatccgctgagttcgaagaaattgaagatgatttgttg
gatcgctttggcgagttgccagaagctgcgcaacgtttattgttggttggacgtcttaag
gcggcagctgaccgcgttggtattgcaacgattcgtcgtgactttaagcgtcaaaacatt
ttggttgtgacgttcgatgcccgttcaaagtttacggcgcaacagtttacccaagcgttg
gcactagccaaggtgcgtggccaggttgtcgtgccagatccagttaaggctgaagtgcca
attcaaccaaatcaaacggctgaagaatggctaacaggcttgttgacggtgtttaacacg
ctagctcctgaagaaggagttgccaatgcctaa
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