Waddlia chondrophila: wcw_0233
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Entry
wcw_0233 CDS
T01255
Name
(GenBank) putative transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
wch
Waddlia chondrophila
Pathway
wch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
wch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
wcw_0233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wch03400
]
wcw_0233
Enzymes [BR:
wch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
wcw_0233
DNA repair and recombination proteins [BR:
wch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
wcw_0233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADI37608
UniProt:
D6YTZ7
LinkDB
All DBs
Position
complement(251061..254339)
Genome browser
AA seq
1092 aa
AA seq
DB search
MLNNLLKSPKLLELHHELQHSGSVLIEELWNAPKALVAALAQKATGKHLLILTGTSQEEA
KLFHDFPMFTNRSVVEYPAWETLPNEKVPPSPDIVGERYEVLKNLLHSPEPQIILSNLHA
CLQKLIPPDTFNQLYVNAATGQRLPFEPFIKHLENMGYLRCPVAADKGEFAVRGGIIDLF
CVSSPEPIRIEFWGDEVESIRLFDPIGQKSIQKIEKASITPAREIELIEHAENLSTILDY
LGENTLVILDDLLTLEDRWAELKTILGKPTRHFSALETFLDNIEPLQKLFWTQQPIEELS
PITSGKGYYSDTAPMLPVTFEIFNHAYQAKRWRNPFFSVMSYLFPDMDKPDTLSSDEILS
ALGTLKEESLYLFFSTETEKAKIQKTLIDLDINLPQGDHQQIGYLSSGFFLQDTKDLIFP
TTELTHRYRIRRQKLRSTYHTTPTDVHDLTPGEVVVHLNNGLGKFIGLEKRPNHLGIDSE
FFLIEYADDAKLYVPVNQAHLISKYIGAHEEIPKLHTLGSSRWKKTRETTERAILGYASD
LLKTYANRELKGGFAFPEDSPDIQAFEEEFPFSETEDQLNAVACIKKDMTSPSAMDRLVC
GDVGYGKTEVAMRAAFKAVMDGGKQVAMLVPTTVLAMQHYENFIERMRNFPINISVLSRF
RSTKQTRQTLEGVANGTVDIVIGTHRLISEDVSFHNLGLIIIDEEQRFGVRAKEHLKKAK
TGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRQPIKTVISEPSDELLKNALLREF
ARDGQAYLIHNRVETLPNMYRRVKKLLPQARIDIVHGQMKPAEIDTVFHHFKNGEIDILI
ATTIVESGIDIPNANTILIDRADRFGLADLYQLRGRVGRWNRRAFAYFLIPKFHSLPEIS
RKRLGALAESSGYGGGMKLAMRDLEIRGAGDILGTEQSGHVSAVGFHLYCKLLKRTIKAL
EGKAPSIFIDTKIEFPFDARLPETYINETTLRMEFYQRLGDAANEGEVDDIWSELQDRFG
KSPEPVEWLYRISRIKAWCSRHRVARLKLEKLSLYSETQKGKKIVAKKQLIGKISSPKEL
EEKVINALERQT
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaacttacttaaaagcccgaagctgcttgagttgcaccacgaattgcagcac
agcggctccgttctgattgaagagctctggaatgcgccaaaagcgctggtggcggctctc
gcgcaaaaagccacaggaaaacatcttctcatcctaacaggaacatcacaagaagaagct
aagctatttcacgactttccgatgttcaccaatcgatccgtcgtcgagtatccggcatgg
gagacgctgcccaatgaaaaggtccctcctagtcccgatatcgttggagagcgctatgaa
gtgcttaagaacctgctccactcccctgagccccaaatcattctttcaaacctgcatgcc
tgtttgcaaaagttgattccacccgacacattcaatcaattatacgtcaatgcggcaaca
gggcaaaggctccctttcgaaccctttatcaagcaccttgaaaacatggggtatctccgt
tgtcctgtcgctgccgataaaggagaatttgctgtgcgcggcggcattatcgacctgttc
tgcgtctcttctccggagccgatcaggattgaattttggggggatgaagtggaatcgatc
cgcttatttgacccgatcggacaaaaatcgattcagaaaatcgaaaaagcctccatcaca
cccgcccgggaaattgagctcattgaacatgctgaaaacctaagcacaattttggactat
ttgggagaaaacacccttgtcatcttggacgacctgctgactctggaagatcgttgggca
gaactgaaaacaatcctgggcaagccaaccagacacttttctgcccttgaaacattctta
gacaacatcgaacccctgcaaaagctcttctggacacagcagccgattgaagagctatcc
ccaattacctcaggaaagggatattattccgatacagcccccatgcttcccgttacattt
gagatcttcaaccatgcatatcaagcaaaaagatggcggaatccattcttctcggtaatg
tcttatttgtttccagatatggacaaacccgacactctctcttcagacgagatcttatct
gcactgggaactctgaaagaggagtctctctacctctttttctctacggaaacggaaaag
gcaaaaatacagaaaacactcatcgatctcgatatcaatctacctcagggcgaccatcaa
caaattggctacctatccagcggtttttttcttcaagatacgaaagatttaatcttccca
acaacagagctcactcaccgctaccgcatcaggcggcaaaaacttcgcagcacctaccac
acaactccaaccgatgtacacgatttgacaccgggagaggtggtcgtccacctcaacaac
ggtcttggcaagtttatcggacttgaaaaacggccgaaccatttagggatcgacagcgag
ttctttttgatcgaatatgccgatgacgccaaactctacgtaccggtcaaccaggctcac
ttaatcagcaagtacatcggggctcatgaagaaattcccaaactgcacacacttggcagc
tcgcgctggaaaaagacacgggaaacaactgagcgagccattttaggctatgcatccgat
ctgctaaaaacttatgctaacagggaactgaaaggaggctttgcttttcccgaagactct
ccagatatccaggcattcgaagaggaatttccctttagtgaaacagaagaccagctcaat
gctgtcgcctgtatcaaaaaggacatgacttctccaagcgctatggatcggctcgtgtgc
ggcgacgtggggtatggcaagacagaagtggccatgcgcgcagctttcaaagcggttatg
gacggcggcaagcaagttgcaatgctggttccaacgaccgtcttagcgatgcagcactac
gaaaattttatcgaacggatgcgcaatttccccatcaatatctcggtcctctcacgtttc
cgatcgacaaaacagacgaggcagactctcgaaggagttgctaacggaaccgttgatatc
gtgatcggcacccaccgccttatcagcgaagatgtctcctttcacaacctgggattgatc
attatcgatgaagagcaaaggtttggagtcagagcaaaagaacatctgaagaaggcaaaa
acaggtgtcgactgcctgacactttccgcaacgccaatcccccgcacgctttacatgtct
ctgatcggagcacgcgacatgtcggtgatcaacactcctccgcaggatcggcagcccatt
aaaactgtcatctccgaaccaagcgatgagctccttaaaaacgctctgctcagagagttt
gcacgcgatggacaagcctatctcatccataacagggttgaaacgcttccaaatatgtat
cggagagtaaaaaaacttcttccgcaagcgcgcatcgatattgtgcacgggcagatgaaa
cccgctgaaatcgatacggttttccaccactttaagaatggcgaaatcgatattctaatc
gcaacaacgattgtagaaagcggcatcgacattcccaatgcaaacaccattttgatcgac
agggcagatcgattcggactggcagatctttatcagctgagaggaagggtaggaaggtgg
aaccgaagggcttttgcgtactttctcatccctaaattccactcgctgcctgaaatttcg
agaaaaagactgggagctttagctgaatcttccggttatggaggagggatgaagcttgca
atgcgcgaccttgaaatccgcggtgcaggcgatatcctcggcaccgagcagtcgggccac
gtctctgctgtcgggttccatctctattgcaaacttcttaaaagaacgatcaaagctttg
gagggcaaagcgcccagcattttcatcgatacgaaaatcgaatttcctttcgatgcccgc
ctgccggaaacgtatatcaacgaaacaacgctcagaatggaattttaccaacggttgggc
gatgccgctaacgagggggaggttgatgacatctggagcgagcttcaagaccggttcgga
aaatctccggaaccagtagagtggctctaccgcatcagcaggatcaaagcttggtgttcc
cgccatcgggtagcgaggctcaaactggaaaaactttccctctattccgaaacgcaaaaa
ggaaaaaagattgtggccaaaaagcagttgatcggaaaaatttcttctccaaaagagctt
gaggaaaaagtgatcaatgccttagaaaggcagacatga
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