Weissella ceti WS105: WS105_0063
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Entry
WS105_0063 CDS
T03295
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wci
Weissella ceti WS105
Pathway
wci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WS105_0063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wci03019
]
WS105_0063
03009 Ribosome biogenesis [BR:
wci03009
]
WS105_0063
Enzymes [BR:
wci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WS105_0063
Messenger RNA biogenesis [BR:
wci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WS105_0063
Ribosome biogenesis [BR:
wci03009
]
Prokaryotic type
rRNA helicases
WS105_0063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AIM63653
UniProt:
A0A075U4D3
LinkDB
All DBs
Position
82081..83667
Genome browser
AA seq
528 aa
AA seq
DB search
MKFSELGLTKDLLTAIEKHGYEEATPIQEKTIPLTLDGKDVIGQAQTGTGKTAAFGLPIL
EMIDTTDTKPQALVVSPTRELAIQTQDELFKLGREKRVRVQAVFGGADIRRQINGLQHGA
HIVVGTPGRLIDHIRRGTIDLSQVKTLILDEADEMLNMGFLDDIEAILKAVPDQRQTLLF
SATMPPAIKRIGVQFMKDPIHVQIEAKELTTDLVEQFYVRVKESEKFDALTRILDVQQPK
LAIMFGRTKRRVDELTRGLELRGYKAAGIHGDLTQQKRSQVLKQFKNHELRILVATDVAA
RGLDVSGVDYVYNFDIPQDPESYVHRIGRTGRAGAEGTSVTFVTSAEMDYLKDIEKLTKK
RMTPLKPATYEEAVSGRLGAATDRVEKLVKRANVSLAEEEINNLVEKYDAQTLAAALLGA
VADISDMETPVTLSHERPLPRKRGGQGGGRGGYRGGNRNGGRGGDRGGNRREGGRGGYRG
GNRNGGRDGGRDGGSRREGGNRNGGSSRREGGNGGQRRSRDFVIRNND
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagagttgggtctaacaaaagacctattaacagccattgaaaagcatggt
tatgaagaagcaacacctatccaagaaaagacaattccattgactttggatggaaaagac
gtcattggtcaagcccaaacaggtactggtaagacagctgcctttggtctaccaatcttg
gaaatgattgacacgacagatactaagcctcaagccttggttgtctcaccaacacgtgaa
ttggcaatccaaacacaagacgaattgttcaagctaggacgtgaaaagcgcgttcgtgta
caagctgtctttggtggagctgacatccgtcgccaaatcaacggtttgcaacatggtgca
cacatcgttgtgggaacaccaggtcgtttgatcgaccacattcgtcgtggaacaattgat
ttgtcacaagttaagacattgatcttggacgaagctgacgaaatgttgaacatgggattc
ttggatgatatcgaagcaatcttgaaggcagtgccagaccaacgtcaaacattgctattc
tcagcaactatgccaccagctatcaagcgtattggtgtgcaattcatgaaggatcctatt
cacgtccaaatcgaagcgaaggaattgacaactgacttggttgaacaattctacgtacgc
gttaaggaaagtgaaaagtttgatgctttgactcgtattttggacgtgcaacaacctaag
ttggctatcatgttcggacgtacaaagcgtcgtgttgacgaattgactcgtggtttggaa
ctacgtggttacaaggccgctggaatccacggtgacttgactcaacaaaagcgttctcaa
gttttgaagcaattcaagaaccacgaactacgtattttggttgcgactgacgttgctgcc
cgtggtttggacgtttcaggtgtggactacgtctacaacttcgatattccacaagaccca
gaatcatacgttcaccgtattggacgtactggtcgtgccggagccgaaggaacttctgta
actttcgttacaagtgccgaaatggactacttgaaggacattgaaaagttgactaagaag
cgcatgacgcctttgaagccagctacttatgaagaagctgtatctggacgtctaggtgct
gcaactgatcgtgttgaaaagttggttaagcgtgcaaacgtaagcttggctgaagaagaa
atcaacaacttggttgaaaagtacgacgcacaaacattggctgctgccctattgggtgcc
gtagctgatatttcagatatggaaacaccagttacactatcacacgaacgtccattgcca
cgtaagcgtggtggacaaggtggtggtcgtggtggataccgtggcggaaaccgtaatggt
ggacgcggtggtgaccgtggtggaaaccgtcgtgaaggtggtcgtggtggataccgtggt
ggaaaccgcaacggtggacgcgatggtggccgtgacggtggatcacgtcgcgaaggtgga
aaccgtaatggtggatcatcacgtcgtgaaggtggaaacggtggacaacgtcgttcacgc
gatttcgtaatccgtaacaacgattaa
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