Weissella ceti WS105: WS105_0787
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Entry
WS105_0787 CDS
T03295
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
wci
Weissella ceti WS105
Pathway
wci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WS105_0787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wci03019
]
WS105_0787
03400 DNA repair and recombination proteins [BR:
wci03400
]
WS105_0787
Enzymes [BR:
wci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WS105_0787
Messenger RNA biogenesis [BR:
wci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WS105_0787
DNA repair and recombination proteins [BR:
wci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WS105_0787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
Cas3-like_C_2
TniB
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AIM64377
LinkDB
All DBs
Position
complement(837790..839037)
Genome browser
AA seq
415 aa
AA seq
DB search
MAMLPTGGGKSLIYQMVGYLRPGVTIIVTPLLSLMQDQVARLNYQGERAVVAFNSTLTGY
ERQRVLARLGQYRFVFISPEMLSQEDVISAFQQVDINLMVIDEAHTMLTWGPDFRPDYLA
LPQIHERLNTPQLLLLTATATPEMLAKLKDDFAKETRKWFTYVESVNRPNIYLHTEHFTQ
RQDKKERLASLITTLKGPGLVYFSSRKQATAMARELQRETGKRIAAYHGGLESTERFRIQ
QQFMLGQLDVIMATSAFGMGIDKDNIRYVIHYHMSSDIPNYLQEFGRAGRNGDTAVAILL
FAPGDEQLHYGLIDQTIPEKQAIQAFYETGRIKSPEQQRLLAYYQQAGYSEIDVKNIMAE
RREKRYADLDKMRQYANANGRLREQILMFFSESIQEEQKAFESVGQRKWHPEELA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggccatgttaccaacaggtggtggtaaatcgttgatttatcagatggttggttactta
cgcccgggggtcacaattattgtgacgcctctgttgtcgttgatgcaagaccaagttgca
cgcttgaattatcaaggtgaacgcgctgtcgtggcctttaattcgaccttaacgggttac
gaacgacaacgtgttttagcacgattgggtcagtatcgattcgtgttcatttcgccagaa
atgctgagtcaagaagatgttatcagtgcatttcagcaagttgacattaatttgatggtc
attgatgaggcccacacaatgttgacttggggaccggattttaggcctgattatctcgcc
ttaccacagatacatgagcgcttaaacacaccgcaattactcttgcttacggcaacagca
acaccagaaatgttagcaaaattgaaggatgattttgcaaaggaaacacgtaaatggttc
acctatgtggaatcagttaaccgaccaaatatctatttacacacggagcactttacacaa
cgccaagacaaaaaagaacggttagccagtttaattacgactttaaaaggaccaggatta
gtgtatttttcaagtcggaagcaagcaacggcgatggcgcgtgagttacaacgtgagacg
ggtaaacggattgctgcatatcatggtggtttggagagtacggaacgattccgaattcaa
caacagtttatgttaggccagctagatgttattatggcgacttcagcatttggtatgggg
attgataaagataatattcgctatgtcattcattatcatatgagtagtgacattccgaat
tatctccaggaatttggccgggcaggtcgaaatggggacaccgcggtggcgattttgttg
tttgcaccgggggatgaacaattacactatggattaattgatcaaacgattcctgaaaaa
caagcaattcaagcgttttatgaaacaggacgaattaaatcacctgaacaacaacgctta
ctcgcatattatcaacaggcgggctactcagagatagatgtgaaaaacatcatggcagag
agacgcgaaaaaaggtatgctgatttagacaaaatgcgccagtatgccaatgccaacggg
cgattacgcgagcaaattttaatgttctttagtgaatcgatacaggaagaacaaaaagca
tttgaatctgtgggacaacgtaaatggcaccccgaagaattggcttag
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