Wolbachia endosymbiont of Cimex lectularius: WCLE_009250
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Entry
WCLE_009250 CDS
T03628
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma 70 subunit RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
wcl
Wolbachia endosymbiont of Cimex lectularius
Brite
KEGG Orthology (KO) [BR:
wcl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
WCLE_009250 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wcl03021
]
WCLE_009250 (rpoD)
Transcription machinery [BR:
wcl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
WCLE_009250 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r3
Sigma70_r2
Sigma70_ner
Sigma70_r1_1
Sigma70_r1_2
DNA_repr_REX1B
Motif
Other DBs
NCBI-ProteinID:
BAP00214
UniProt:
A0A060PZL0
LinkDB
All DBs
Position
complement(915319..917259)
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AA seq
646 aa
AA seq
DB search
MMSTINNAEGKKKIIRDLVTKSIRKGGFITLDDINDKLSDENFSSDFIDDTISILQDSGI
NVLESSEDEEDTSANNDDSKLDDDDTLSSSATTLVQNDDPVRVYLQDMSSVKLLSRADEI
EIAKKIESEKYNMLRAIIETSVTLKMIKAWRDDLSSGALLLREIIDLDAIYNSDFNTIPK
EDGEESAEDFEDSEDTKDDEHCEDDETGNKKGDDEQESGNEDISSANLNVSILEMESDLL
PKVIVALDEIITLANEALTLKKNSPSESGYEDLYNQIWSIALQIKLSDAAVTQITQKLYN
INKSIMLEEANLISEARKYDIDRESFYKVYNEVLLKCELKGTSFLKTNENESFLTEELKI
KCTRFIEGNSECIARSVNNIKQYIQEDNVQEFKELIKRIQKHEREVSEAKQEMIKANLRL
VVSIAKKYSNRGLALLDLIQEGNIGLMKAVDKFNYKRGYKFSTYGTWWVRQSITRAIPEQ
SKVVRIPVHMVEIISKINRTLRKLTHEMEREPTLEELSTELGMPLERIRKVMKIARDPVS
LEAPTGKDDSSTFGDCIEDKRVSKPEDAAILADLRGITTNVLATLTPKEERILRMRFGLG
KDGKEHTLEEVGRIFNVTRERIRQIEAKALRKLKHPSRARKLRGFF
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcaactattaataatgcagaaggtaagaaaaaaatcatcagggatctagtgacc
aaaagtataagaaagggtggttttattactcttgatgatataaatgataaactgtcagac
gaaaatttctcatctgacttcatagatgatactatatctatattacaagattctggaatt
aatgtacttgagagcagcgaagatgaagaagatacttccgccaacaatgatgatagcaaa
ctcgatgacgatgatacgttgtcaagctctgccacaactttagtacaaaacgacgatccg
gtaagagtttatctacaagacatgagctccgtaaagcttctatcaagggcagatgaaatc
gagatagcaaaaaaaattgaatctgaaaagtataacatgttgcgtgcaataattgaaaca
tcagtaacactaaaaatgataaaagcatggcgtgatgatttgagtagtggagctctctta
ctgagagaaattatagacctagatgcaatttataattctgattttaacacaatacccaaa
gaggatggcgaagaaagtgccgaagactttgaggattctgaagataccaaagatgatgaa
cactgcgaagatgatgaaacaggtaataaaaagggtgatgatgagcaagaaagtggtaac
gaagatataagctcagcaaatttaaatgtttctattcttgaaatggaaagtgacttattg
cccaaggtcatagttgcactagatgagataattactttagcaaatgaagcattgacacta
aagaaaaattcccctagcgaatcaggatatgaagatttatataatcaaatatggtccata
gcgttacaaattaaattaagtgacgctgctgtcactcaaattacacaaaaactctataat
ataaacaagtctataatgcttgaggaagctaatcttatttctgaggctagaaaatatgat
attgacagggaaagtttctacaaagtttataatgaagtacttttaaagtgtgagttaaaa
gggacaagttttttaaagaccaatgaaaacgaatcttttcttacagaagaattaaaaatc
aaatgtacaaggtttatagaaggtaactctgagtgtatagcccgctctgtgaataatatt
aagcaatatatacaagaagataacgtacaggaatttaaggagttaatcaaaaggatacaa
aaacatgagcgagaagtctccgaagcaaagcaggaaatgattaaagctaatttaaggtta
gtagtctccatcgctaaaaaatattcaaacagaggtcttgctttgcttgatttgatacaa
gaaggcaatattggtcttatgaaggccgtagataaatttaattacaaacgcggatataag
ttctcaacttacggaacttggtgggtaaggcagtcaatcactagagcaatacctgagcag
tctaaagtagttagaataccggttcatatggtagaaattatcagcaaaatcaacaggaca
ctaagaaagttaactcatgagatggaaagagagcctacattagaggaattgagtacggaa
cttggaatgcctttggaaaggatacgcaaagttatgaaaatagcaagggaccctgtaagt
cttgaagctccaacgggaaaagatgatagtagtacttttggtgattgcatagaagacaaa
cgggtctcaaagccagaagatgctgcaatacttgctgacttgcgtggtattacaactaat
gttcttgcaactttaacgccaaaggaagaaaggattctcagaatgcgctttggtcttggt
aaagatggaaaagaacataccttagaagaagtaggaagaatctttaacgtaacacgtgag
agaattaggcaaatagaagcaaaagcactacgtaaattaaaacatccaagccgtgctaga
aaactcagagggttcttttga
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