Wohlfahrtiimonas chitiniclastica: PE074_00475
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Entry
PE074_00475 CDS
T09056
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
wcn
Wohlfahrtiimonas chitiniclastica
Pathway
wcn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
wcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PE074_00475 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wcn03400
]
PE074_00475 (recD)
Enzymes [BR:
wcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PE074_00475 (recD)
DNA repair and recombination proteins [BR:
wcn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PE074_00475 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
RecD_N
SH3_13
UvrD-helicase
NAT10_TcmA_helicase
AAA_22
UvrD_C
SLFN-g3_helicase
GvpD_P-loop
nSTAND3
ResIII
AAA_16
PIF1
ANTH
PhoH
AAA_28
Motif
Other DBs
NCBI-ProteinID:
WHR55468
LinkDB
All DBs
Position
100788..102596
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AA seq
602 aa
AA seq
DB search
MSDLLTYAQSSGFFTSIDCHFAKTLSKTDPKLQLLALIVSRAYGSKHTMVPLRYIHHERW
FTGFDAQKIDECMTTLKHLAGIDAIEDWAPLFAWIKQQPHYPLAIANDGVYLAKNLHYET
IIVEFLKRHQDSDANMPSGDTIDLLHQLFPRSDEIDHQKIAAVNALLSPTAIISGGPGTG
KTTTVIRILMLLLNEHPNLHISLAAPTGKAAARLSESIEKQKTDFKAQRPELTHLLDKIP
SQSTTLHRLLSFNPNQIKPRYHAYHPLPTDLIIIDEASMIDLYIFNLLIEALPPHVRIII
LGDKDQLASVEAGAIMGEICQNIGYDAKRLALIENIMGQSLSTEFTPKDVPLNNVTLLTK
SHRFSEHSGIGQLAKAVNEQHARSFMPIVAQFPDELIFINTGEVSNWRTLIHALLADYVA
LCQSKAEPHVLFDALQKVRILSAINVSEFGTHALNEYISTTLFNADGNGLYHGQAIMILQ
NDYVNHIFNGDVGIITEDNGRIIAYFESDNGELRALPVQLLPHYETAFAMTIHKSQGSEF
DHVMLVLPDFYSKILTKELLYTGITRAKKQLTLMGTPRIIETTIRNHTERFSGIGAQLNR
MS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttattaacgtatgcccaatcatcaggctttttcacaagcattgattgccat
tttgccaaaaccctcagcaaaacggatccaaaattacagttgctggccctcattgtgagc
cgcgcttatggctcaaagcataccatggtgccactgcgttacattcatcatgaacgatgg
ttcaccggctttgatgcccaaaagattgatgaatgcatgacaaccctcaaacatttggcc
ggcattgacgccattgaggattgggcgccgctgtttgcttggatcaagcaacagcctcat
tatcctttagcaattgccaatgatggcgtttatctggctaaaaatctccattatgaaacc
atcattgtggaatttttaaagcgccatcaagacagcgatgcaaacatgccaagtggtgac
accatcgatcttttgcatcaactctttccccgcagtgatgagattgatcatcaaaaaatc
gccgctgtcaatgcacttctttcgcccaccgccatcatttccggcgggcctggcaccggc
aaaaccaccacggtgattcgcattttgatgctgctcctcaatgagcatccgaatttacac
atttcacttgccgcccccacgggaaaagcagcggcacgcttgagtgaatccattgaaaag
caaaaaaccgactttaaagcccagcggccagaactgacccatttactggataaaatcccc
agtcaaagcaccacgctgcatcgcttattgagttttaaccccaatcaaatcaagccgcgt
tatcatgcgtatcatcctttgcccaccgacctcatcatcattgatgaggcctcgatgatt
gatctctatattttcaatctcttgattgaagctttaccgccgcatgtgcgcatcattatt
ttgggcgataaagatcagctggcctccgtggaagccggcgccattatgggggaaatttgc
caaaacatcggttatgacgccaagcgccttgccctcattgaaaacatcatggggcaatcg
ttatctactgagtttaccccaaaggatgtgccccttaataatgtgacgctgttaaccaaa
agtcatcgtttctctgagcattcagggattgggcaattggcaaaagctgtcaatgagcag
catgcccgcagtttcatgccaattgtggcgcaatttcccgatgagctcatcttcatcaac
accggagaagtgagcaactggcgcacgctcattcatgcactacttgctgattatgttgcg
ctgtgccaaagcaaagctgagccacacgtgctctttgatgcgctacaaaaggtgcgcatt
ttatccgccatcaatgtgtcagagttcggcacccatgcgctcaatgaatacatcagcacc
acactgtttaatgctgatggcaatgggctttatcacgggcaagccatcatgattttgcaa
aatgattatgtcaatcacattttcaatggcgatgtgggcatcatcacagaggacaatggg
cgcatcattgcctattttgaaagtgacaatggcgaattaagggcgctgccagtgcagctc
ttgccccattatgaaacggcttttgccatgacgatccataaatcccaaggcagtgaattt
gatcatgtgatgctggtattgccagatttttacagtaaaatcctcaccaaagagctgctc
tatacgggcattacacgcgctaaaaaacagctcacattgatgggtacgccgcgcatcatc
gaaaccaccattcgcaatcatactgagcgattcagcggcattggggcacaattaaatcgt
atgtcgtga
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