Wohlfahrtiimonas chitiniclastica: PE074_01710
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Entry
PE074_01710 CDS
T09056
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
wcn
Wohlfahrtiimonas chitiniclastica
Pathway
wcn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
wcn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PE074_01710 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
wcn03021
]
PE074_01710 (rpoB)
03400 DNA repair and recombination proteins [BR:
wcn03400
]
PE074_01710 (rpoB)
Enzymes [BR:
wcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PE074_01710 (rpoB)
Transcription machinery [BR:
wcn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PE074_01710 (rpoB)
DNA repair and recombination proteins [BR:
wcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PE074_01710 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
SPG4
DUF8806
DNAPolymera_Pol
Motif
Other DBs
NCBI-ProteinID:
WHR55704
LinkDB
All DBs
Position
complement(347116..351234)
Genome browser
AA seq
1372 aa
AA seq
DB search
MYSFTEKKRIRKDFGKQSSVLDVPYLLSIQLDSYENFLQQGENRKKRKNQGLQAAFESIF
PITTTKAKTPTAPGYTLSLEYMDYHLGEPEFDVRECQLRGVTYSAPLRVGMRLRISDADT
NAIKEVREAAIDRFGRGGVYLGELPLMTENGTFVINGTERVVVSQLHRSPGVFFDHDKGK
SHSSGKLLFSARVIPYRGSWLDFEFDVKDLLYVRIDRRRKLHATVLLRALGLSDTEILDT
FFDKNTFLFEDGKIYLELIADRLRGEIAAFDIVVNDQLIAERGRRITAKHIRELTKAGVE
KLEVPVEYLIGKVIAEDIFDEDTGEVLLLANEVLTYDLIVERLAQKNIKRINVLYTNDVD
RGSYISDTLRADITKTQLEAQVEIYRMMRPGEPPAKEVAETLFHSLFFDIDRYDLSAVGR
MKFNRRLNRGTDVGEGTLSNQDIIDVIKTLVDIRNGNGNVDDVDHLGNRRVRCVGEMAEN
VFRIGLVRIERAVKERLLLAEAEGLTPHELINAKPVAAAMKEFFGSSQLSQFMDQNNPLS
EITHKRRISALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLACYARTN
EYGFLETPYRKVVDGHVTNEIEYLSAYEEMEFGIAQANARLTETGEFKDDLIASHVNGEF
ILLTRDQIQYMDVSPRQIVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGT
GIESTVARDSGVCIVAKRGGIVDYVDATRIVVRVNEDETKPGEAGVDIYNLTKYMRSNQS
TCINQRTLVRVGDRVSAKDVMADGPSTDLGELALGQNILVAFMPWNGYNYEDSILISERV
VREDRFTTIHIEELTCVARDTKLGPEEITSDIPNVSEAALTKLDEAGMAFIGAEVKAGDI
LVGKVSPKGETQLTPEEKLLRAIFGDKASDVKDTSLRVPTGMDGTVIDVRVFTRDGIEKD
SRTREIEAAELKRIRKDLNDQLRILEDDLFDRAQRLLMANAAASGNKGFKAGANFTEDYL
MSLDREDWLNLALKEEDAANDLAQLKELLSQQRKEFDKQFEEKREKLTQSDELAPGVLKM
VKVYLAVKRRIQPGDKMAGRHGNKGVVSMIVPEEDMPYMEDGTPVDICLNPLGVPSRMNI
GQILETHLGWAAKGLGNKIQRMLEEKSAMSDLRSFVDEIYNKDESAQKVDLAEFSDNEFL
ELCHNLKKGVPMATPVFDGASEEEMRRMLRLADLPESGQITLYDGRTGDAFDRPVTIGYM
YMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEM
LTVKSDDVVGRTEVYKSIVNGEHRMDTGMPESFNVLVKEIRSLGINVELDGE
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgtattcttttacagaaaaaaagcgtatccgtaaagattttgggaagcagtcgagcgtt
ttagacgtcccatatcttttatcgattcaattagattcatacgaaaacttcctacaacaa
ggtgaaaatcgtaagaagcgtaaaaaccaaggcttacaagctgcctttgaatctattttc
cccatcacaacaacgaaggcaaaaacgccaacggctccaggttatactttaagccttgag
tatatggattatcacttaggtgagcctgaatttgatgtgcgcgaatgccagttgcgtggt
gtcacgtattctgcgcctttacgtgtgggtatgcgcttacgtatttctgatgctgataca
aacgcgatcaaagaagttcgcgaagcagccatcgaccgttttggccgtggtggtgtgtat
ttaggtgagttaccgctcatgaccgaaaacggtacatttgtgatcaacgggactgagcgt
gttgtggtttctcagttgcaccgttcaccaggtgtattctttgatcatgacaaaggtaaa
agccattcttcaggcaaattattattctcagcacgtgtcatcccttaccgtggctcttgg
ttagactttgaatttgacgtgaaagatttattgtacgtgcgtattgaccgtcgtcgtaaa
ttacacgcaactgtattgttacgcgcattaggcttgagcgatacagaaatcttagacact
ttcttcgataaaaatacattcctcttcgaagatggcaaaatttacttagaattaatcgca
gatcgtttacgtggtgaaatcgctgcctttgacattgtggtgaatgatcagttaatcgct
gaacgtggccgccgtatcacagcaaaacacatccgtgaattgaccaaagcaggcgttgaa
aaattagaagtaccggttgaatacttaattggtaaagtgatcgcagaagatatctttgat
gaagatacaggcgaagtattgttgctagctaatgaagtattgacgtacgacttaatcgtt
gagcgcttagcacagaaaaatattaaacgcatcaatgtattgtatacaaatgatgtggat
cgtggttcttatatctctgacacattgcgtgcagacatcacgaaaactcagttagaagcg
caagtagaaatctaccgcatgatgcgcccaggtgaaccacctgcgaaagaagtggctgaa
acattgttccacagcttattctttgacattgatcgttatgacttatctgccgttggccgc
atgaagttcaaccgtcgtttaaaccgcggtacggatgtgggtgaaggtacgttgtctaac
caagacatcatcgatgtgatcaaaacattggtggacatccgtaacggtaacggcaatgtg
gatgacgtggatcacttaggtaaccgtcgcgtacgttgtgtgggcgaaatggctgaaaac
gtattccgcattggtttggtgcgcattgaacgtgcagtgaaagagcgcttattgcttgca
gaagcagaaggcttaacaccacacgagctcatcaatgctaaacctgtggcagcagcaatg
aaagaattctttggttcttctcagttgtctcagttcatggatcagaacaacccattgtca
gaaatcacgcataaacgtcgtatctctgcattaggtcctggtggtttgacgcgcgaacgc
gcaggcttcgaagttcgagacgttcacaccactcactatggtcgtgtgtgcccaatcgaa
acacctgaaggtccaaacatcggtttgatcaactcattggcatgttatgcacgtacaaac
gaatatggcttcttagaaacgccttatcgtaaagtggtggatgggcatgtgaccaatgaa
atcgaatacttgtctgcttatgaagagatggaatttggtattgctcaggcaaacgcacgt
ttgacggaaactggcgaatttaaagatgatttaattgcctctcacgtgaatggtgagttc
atcctcttgacgcgtgatcaaatccaatacatggacgtatcacctcgccaaatcgtatct
gtggctgcagccttgattccattccttgagcacgacgatgctaaccgtgccttgatggga
tcgaacatgcaacgacaagccgttccaactttgcgttcagacaaacctttagtgggtact
ggtattgaaagcactgtggcacgtgactctggcgtatgtatcgtggctaaacgtggcggt
attgttgattatgtggatgccacgcgcatcgttgttcgtgtgaacgaagacgaaaccaag
ccaggtgaagcaggcgttgacatttataacttaaccaaatacatgcgttctaaccaaagt
acatgtatcaaccaacgtacattggtgcgtgtgggtgatcgtgtctctgcaaaagacgtg
atggcagatggtccttccactgacttaggtgaattggcattgggtcaaaacatcttagtg
gcgttcatgccatggaatggttataactacgaagattccatcttaatctctgagcgagtg
gtgcgtgaagatcgtttcacaaccattcacattgaagaattaacatgtgtggcgcgtgat
acgaagttaggtcctgaagagatcacctctgacattccaaacgtatcagaagctgcatta
acaaaattagatgaagccggtatggcgttcatcggtgctgaagtgaaagccggtgacatc
ttagtgggtaaagtttcgccaaaaggtgaaacacaattaacgcctgaagaaaaattattg
cgcgcaatctttggtgataaagcgtcagatgttaaagatacctctttacgtgtgccaaca
ggtatggatggtaccgtgattgacgttcgcgtatttactcgtgatggcatcgaaaaagat
agccgtacacgtgaaatcgaagcggctgaattaaaacgcatccgtaaagatttgaacgat
caattgcgcatcttagaagatgacttatttgaccgtgcacaacgcttattgatggccaat
gctgccgcttctggcaacaaaggcttcaaagccggtgcaaacttcacagaagactactta
atgagtttagatcgtgaagattggttgaacttagcattgaaagaagaagatgctgccaat
gatttagcgcaattgaaagaattgttatcacaacaacgcaaagagtttgataagcaattt
gaagagaaacgcgaaaaattaacgcaaagcgatgaattagcaccgggcgtattgaaaatg
gttaaagtttacttagccgttaaacgtcgcattcaaccaggtgataaaatggccggccgt
catggtaacaaaggtgttgtgtccatgatcgttcctgaagaagacatgccatacatggaa
gatggtacacctgtggacatctgtttgaaccctctgggcgttccgtcacgtatgaacatc
ggtcagattttagaaactcacttaggttgggcagcaaaaggcttaggtaacaagattcaa
cgcatgttggaagaaaaatcagcgatgagtgatcttcgcagctttgtggacgaaatctat
aacaaagatgaaagtgcacaaaaagttgatttagctgaattctctgacaatgagttctta
gagttgtgtcacaacttgaagaaaggtgtgccaatggcaacaccagtatttgatggtgcc
tctgaagaagagatgcgtcgtatgctccgtttagcggacttgccagaatctggtcaaatc
acgctttacgatggtcgcacaggtgatgcgtttgaccgtccagtaaccatcggttacatg
tacatgctcaaattgaaccacttagtggatgacaaaatgcatgcgcgttcaacaggtcct
tactcattagtgacgcaacaaccattgggtggtaaagcacaatttggtggtcagcgtttc
ggtgagatggaggtgtgggcactggaagcttatggtgcatcctatacacttcaagaaatg
ttgacagtgaaatcggatgacgttgtcggtcgtacggaagtttataagagtattgtgaat
ggagagcatcgaatggatacaggaatgccagaatcattcaacgttctcgtcaaagagatc
cgttctcttggtatcaatgtagagttagatggtgagtaa
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integrated database retrieval system
