Wohlfahrtiimonas chitiniclastica: PE074_03305
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Entry
PE074_03305 CDS
T09056
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
wcn
Wohlfahrtiimonas chitiniclastica
Pathway
wcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
wcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PE074_03305 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
wcn03400
]
PE074_03305 (sbcB)
Enzymes [BR:
wcn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
PE074_03305 (sbcB)
DNA repair and recombination proteins [BR:
wcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
PE074_03305 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PE074_03305 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PE074_03305 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
RNase_T
ExoI_C
Motif
Other DBs
NCBI-ProteinID:
WHR55993
LinkDB
All DBs
Position
691252..692664
Genome browser
AA seq
470 aa
AA seq
DB search
MAEFLFYDYETFGISPKYDRIAQFAAIRTDSDFNIIGEPINIYCQQADDYVPSPEAILIT
GITPDYCNEHGLPEHEFARRIYDEFMKPDTCVMGFNSIRFDDEMTRYLFYRNFFDPYAYA
WKNGNSRWDALDLVRGVYALRPEGIEWPKIDGQTSLKLESLTKANGLSHDNAHDALSDVY
ATIDVLKLLKEKQPRFYDYFYQHRRAKDLLPIIEQHFGRPLVHVSGMFGEHNGYLSVVVP
LTMHPWNKNAVVVVDLRGDLDELLNYSAEEIKAAMYTANEDLGEGRSRVPLKLIHLNKCP
IISPVNVLKYTQNLYGLDLNAALDKVAIVNGHHAELERKAREIFAPTTAPSYDDQPLLSR
VESMLYDGFFEFSDKKIMEEIPYLSEEALKNSHYQFKDARIAPLLFLYRAKNFPMSLTSE
EYQEWEAYCDARRERTLSEQQAVYTAKVAEYADDPVKSKLLADCRSLYFE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatttctcttttacgattatgaaaccttcgggatttcaccaaaatatgatcgc
attgcgcaatttgcggcaatccgcacggacagcgatttcaacatcattggtgagcccatc
aatatttattgtcagcaagcggacgattatgtcccctcgcctgaagccattttaatcacg
ggcattacgccagattattgcaatgagcacggcttgcctgaacatgaatttgcccgcagg
atttatgatgagttcatgaagcctgatacttgcgtgatgggatttaactccatccgcttt
gatgatgagatgacccgttatctcttttatcgtaacttttttgatccctatgcgtatgca
tggaaaaatggcaacagccgctgggatgctttagatttagtgcgtggtgtgtatgccctt
cgtcctgaagggattgagtggccaaagattgatggtcaaaccagtttaaaattagaatcg
ctcacaaaagccaatggtttaagtcatgacaatgctcacgatgccttaagtgatgtttat
gccacgattgatgtgctcaagcttctcaaagagaagcagccgcgcttttatgattatttc
tatcagcaccgccgtgctaaagatcttttgcccatcattgaacaacattttgggcggccg
ttggtgcatgtttctggcatgtttggtgaacacaatggttatctctctgttgttgtgccg
ctcaccatgcatccttggaataaaaatgccgttgtggtggtggatttacgcggcgattta
gatgagttgctcaattacagcgctgaagagattaaagcggcgatgtacacagcgaatgaa
gatcttggcgaaggcagaagccgcgtgccattaaagctcattcatctcaataaatgcccg
atcatttcgccggtgaatgttttaaaatacacacaaaatttatatgggttagacctcaat
gcggcgcttgataaagtggccattgtcaatggtcaccatgcggagcttgagcgaaaagcg
cgcgaaatttttgcgccaacaactgcgccctcttatgatgatcagccgttattgtcccgc
gtagaatcaatgttatatgatggtttttttgaattcagcgataaaaaaatcatggaagag
attccttatttatccgaagaagcgttgaaaaatagccattatcaatttaaagatgcacgc
attgcgccattgctctttttgtatcgtgcgaaaaacttcccgatgagtttaacgagtgaa
gagtatcaagaatgggaagcgtactgtgatgcacgccgcgaacgtacgctcagtgaacag
caagctgtgtacacagctaaagtcgctgaatatgcggatgatcctgtgaaatcgaagctg
ctggccgattgccgctcgttatattttgaatga
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