Wohlfahrtiimonas chitiniclastica: PE074_06110
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Entry
PE074_06110 CDS
T09056
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
wcn
Wohlfahrtiimonas chitiniclastica
Pathway
wcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PE074_06110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wcn03019
]
PE074_06110
Enzymes [BR:
wcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PE074_06110
Messenger RNA biogenesis [BR:
wcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PE074_06110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WHR54673
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All DBs
Position
1229990..1231576
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AA seq
528 aa
AA seq
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MAKPELSNMVFKDLPLDESLQEALEDNNYVQCTPIQALSLPLLLNGQDVVGQAQTGTGKS
AAFLLATLNRLMTVPVAKNKRGPFAIIMAPTRELALQIYEDAQMLGRYTGLRFSCIYGGT
GYEKQRHDLATDVDVVIGTVGRILDFYKQGELNLKEIEVVVLDEADRMFDLGFIADIRYL
FRKMPPVGQRQNMFFSATFSQRILELAYEHMNMPEKVQIEAEHITADKIKQYLVHIGSSD
KLSLLFGILRKEQPKRTIIFVNTKRVAEEISNYLVANDYQAAVLSGDIPQNKRERLLESF
KEGKVSIMVATDVAARGLHISDVTHVINYDLPQDVEDYVHRIGRTARAGEEGTAISFACE
EYVYSLPDIEEYIEMKIPVIPLEDDLLVVPKRPSRNQNRSNSNNKPRREQKPKTERIERT
EKAAKTVEEKTEVVDAPVEVAASEVEVKEATVTVSMTQDDLNTATPTFIIEDAPVVDEAL
EEIAESAEEKADRKFDRRRRPRNMHTRGRSKSYQRNNKAPRNEENHEA
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaccagaattaagtaacatggtatttaaggatttaccgctcgatgaatctttg
caagaagcattagaagacaacaactacgtgcaatgtacaccgatccaagcgttgtcctta
ccattgttattaaacggtcaagatgtggtaggacaagcacaaacagggacgggcaaaagt
gccgcctttttgttggcaaccttaaatagattgatgacggtgccggtggcgaaaaataaa
cgcggcccctttgccatcatcatggcgccaacgcgtgagttggccttacaaatttatgaa
gatgctcagatgttagggcgttacaccggcttacgtttcagctgcatttatggtggtaca
ggctatgaaaagcagcgccatgatcttgccacagatgttgatgtggtgatcggtacagtg
ggtcgcattttagacttttacaagcaaggcgaactcaatttaaaagagattgaagtggtg
gtgcttgatgaagccgaccgcatgtttgatttaggcttcattgctgacatccgttacctc
tttagaaaaatgccgcctgtgggtcagcgtcaaaatatgttcttctcggcaactttctct
cagcgcattttagagttggcgtatgagcacatgaacatgccagagaaagttcaaattgaa
gcagagcacatcacggctgataaaatcaaacaatatttagtgcacattggttcatcggat
aaattgtccttgttatttggcattttgcgtaaagagcagccaaaacgcaccatcatcttt
gtgaacacaaaacgcgtggcagaagagatctccaattatttagtggccaatgattatcaa
gcggctgtgttgtccggtgacatcccacaaaataaacgtgagcgcttattagaatccttt
aaagagggcaaagtgtccatcatggtggcgacagatgttgctgcgcgtggcttacatatt
tcagatgtgacgcatgtgatcaactatgatttaccacaagatgtggaagattatgttcac
cgcattggccgtactgcgcgcgccggtgaagaaggcactgcgatcagctttgcctgtgaa
gaatatgtatactctttgccggacattgaagaatacattgaaatgaaaattccggtgatt
ccattggaagatgatttattggtggtgcctaagcgcccaagccgcaatcaaaaccgttca
aacagcaacaataaaccgcgcagagaacaaaaaccaaaaacagagcgcattgaaagaacg
gaaaaagcagccaaaactgttgaagagaaaacagaagtggtggatgcacctgttgaggtt
gcagcatctgaagtggaagtcaaagaagccacggtaacggtttcgatgacacaagatgat
ttaaacacagccacgccaacctttatcattgaggatgcgccggttgtggatgaagcatta
gaagaaatcgcagaatctgccgaagagaaagcggatcgtaaatttgatcgccgtcgccgc
ccacgcaacatgcacacacgtggtcgcagcaaatcttatcaacgtaacaataaagcccca
agaaatgaggagaaccatgaagcttaa
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